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CCL14 C-C motif chemokine ligand 14 [ Homo sapiens (human) ]

Gene ID: 6358, updated on 14-Nov-2024

Summary

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Official Symbol
CCL14provided by HGNC
Official Full Name
C-C motif chemokine ligand 14provided by HGNC
Primary source
HGNC:HGNC:10612
See related
Ensembl:ENSG00000276409 MIM:601392; AllianceGenome:HGNC:10612
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CC-1; CC-3; CKB1; MCIF; NCC2; SY14; HCC-1; HCC-3; NCC-2; SCYL2; SCYA14; HCC-1(1-74); HCC-1/HCC-3
Summary
This gene, chemokine (C-C motif) ligand 14, is one of several CC cytokine genes clustered on 17q11.2. The CC cytokines are secreted proteins characterized by two adjacent cysteines. The cytokine encoded by this gene induces changes in intracellular calcium concentration and enzyme release in monocytes. Multiple transcript variants encoding different isoforms have been found for this gene. Read-through transcripts are also expressed that include exons from the upstream cytokine gene, chemokine (C-C motif) ligand 15, and are represented as GeneID: 348249. [provided by RefSeq, Dec 2009]
Expression
Broad expression in spleen (RPKM 229.5), fat (RPKM 134.4) and 15 other tissues See more
Orthologs
all
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Genomic context

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See CCL14 in Genome Data Viewer
Location:
17q12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (35983288..35986729, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (36931192..36934633, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (34310324..34313765, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene lysozyme like 6 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:34288003-34288221 Neighboring gene Sharpr-MPRA regulatory region 10414 Neighboring gene C-C motif chemokine ligand 16 Neighboring gene CCL15-CCL14 readthrough (NMD candidate) Neighboring gene uncharacterized LOC107985068 Neighboring gene C-C motif chemokine ligand 15 Neighboring gene C-C motif chemokine ligand 23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Chemokine CCL14 affected the clinical outcome and correlated with immune infiltrates in thyroid carcinoma. Zhang MM, et al. Histol Histopathol, 2023 Jun. PMID 36409028
  2. HCC-1, a novel chemokine from human plasma. Schulz-Knappe P, et al. J Exp Med, 1996 Jan 1. PMID 8551235, Free PMC Article
  3. CCL14 exacerbates intraplaque vulnerability by promoting neovascularization in the human carotid plaque. Li Z, et al. J Stroke Cerebrovasc Dis, 2022 Oct. PMID 35973397
  4. Posttranslationally processed forms of the human chemokine HCC-1. Richter R, et al. Biochemistry, 2000 Sep 5. PMID 10978165
  5. C-C motif chemokine ligand 14 inhibited colon cancer cell proliferation and invasion through suppressing M2 polarization of tumor-associated macrophages. Li N, et al. Histol Histopathol, 2021 Jul. PMID 34096611

See all (45) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Performance of urinary C-C motif chemokine ligand 14 for the prediction of persistent acute kidney injury: a systematic review and meta-analysis.
    Title: Performance of urinary C-C motif chemokine ligand 14 for the prediction of persistent acute kidney injury: a systematic review and meta-analysis.
  2. Chemokine CCL14 affected the clinical outcome and correlated with immune infiltrates in thyroid carcinoma.
    Title: Chemokine CCL14 affected the clinical outcome and correlated with immune infiltrates in thyroid carcinoma.
  3. CCL14 exacerbates intraplaque vulnerability by promoting neovascularization in the human carotid plaque.
    Title: CCL14 exacerbates intraplaque vulnerability by promoting neovascularization in the human carotid plaque.
  4. C-C motif chemokine ligand 14 inhibited colon cancer cell proliferation and invasion through suppressing M2 polarization of tumor-associated macrophages.
    Title: C-C motif chemokine ligand 14 inhibited colon cancer cell proliferation and invasion through suppressing M2 polarization of tumor-associated macrophages.
  5. Glycosylation Regulates N-Terminal Proteolysis and Activity of the Chemokine CCL14.
    Title: Glycosylation Regulates N-Terminal Proteolysis and Activity of the Chemokine CCL14.
  6. Serum proteins TGFBI, PCSK9, and CCL14 are potential biomarkers for different traditional Chinese medicine syndromes of multidrug-resistant tuberculosis.
    Title: Serum proteins TGFBI, PCSK9, and CCL14 are potential biomarkers for different traditional Chinese medicine syndromes of multidrug-resistant tuberculosis.
  7. Lysine demethylase 5B suppresses CC chemokine ligand 14 to promote progression of colorectal cancer through the Wnt/beta-catenin pathway.
    Title: Lysine demethylase 5B suppresses CC chemokine ligand 14 to promote progression of colorectal cancer through the Wnt/β-catenin pathway.
  8. CCL14 expression in healthy human palatal mucosa is strongly negatively correlated with serum cotinine levels.
    Title: Whole transcriptome analysis of smoker palatal mucosa identifies multiple downregulated innate immunity genes.
  9. TMEM88, CCL14, and CLEC3B genes were stable and available in predicting the survival and palindromia time of hepatocellular carcinoma. These genes could function as potential prognostic genes contributing to improve patients' outcomes and survival
    Title: TMEM88, CCL14 and CLEC3B as prognostic biomarkers for prognosis and palindromia of human hepatocellular carcinoma.
  10. CCL2, 3, 14 have roles in stimulating macrophage bone marrow homing, proliferation, and polarization in multiple myeloma
    Title: Chemokines CCL2, 3, 14 stimulate macrophage bone marrow homing, proliferation, and polarization in multiple myeloma.
Submit: New GeneRIF Correction See all GeneRIFs (20)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

HIV-1 interactions

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Protein interactions

Protein Gene Interaction Pubs
Envelope transmembrane glycoprotein gp41 env A synthetic peptide corresponding to the immunosuppressive domain (amino acids 574-592) of HIV-1 gp41 upregulates the expression of chemokine (C-C motif) ligand 14 (CCL14) in peptide-treated PBMCs PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Readthrough CCL15-CCL14

Readthrough gene: CCL15-CCL14, Included gene: CCL15

Homology

Clone Names

  • FLJ16015

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables CCR chemokine receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables chemokine activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in antimicrobial humoral immune response mediated by antimicrobial peptide IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cell chemotaxis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in chemokine-mediated signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in inflammatory response IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intracellular calcium ion homeostasis TAS
Traceable Author Statement
more info
 PubMed 
involved_in positive regulation of cell migration IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of cell population proliferation TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
C-C motif chemokine 14
Names
chemokine (C-C motif) ligand 14
chemokine CC-1/CC-3
chemokine CC-3
hemofiltrate CC chemokine 1
new CC chemokine 2
small inducible cytokine subfamily A (Cys-Cys), member 14
small-inducible cytokine A14

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_032962.5 → NP_116738.1  C-C motif chemokine 14 isoform 2 precursor

    See identical proteins and their annotated locations for NP_116738.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2, also known as CCL14b) represents the longer transcript and encodes the longer isoform (2).
    Source sequence(s)
    AA612866, AC244100, BC045165, BI496964, DA821276
    Consensus CDS
    CCDS45652.1
    UniProtKB/Swiss-Prot
    Q16627
    Related
    ENSP00000479097.1, ENST00000622526.1
    Conserved Domains (1) summary
    smart00199
    Location:48 → 106
    SCY; Intercrine alpha family (small cytokine C-X-C) (chemokine CXC)

  2. NM_032963.4 → NP_116739.1  C-C motif chemokine 14 isoform 1 precursor

    See identical proteins and their annotated locations for NP_116739.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3, CCL14a) lacks an alternate in-frame exon in the 5' coding region, compared to variant 2. The resulting isoform (1) lacks an alternate segment near the N-terminus, compared to isoform 2.
    Source sequence(s)
    AC244100, DA821276
    Consensus CDS
    CCDS32624.1
    UniProtKB/Swiss-Prot
    E1P649, E1P650, Q13954, Q16627
    Related
    ENSP00000481023.1, ENST00000618404.5
    Conserved Domains (1) summary
    smart00199
    Location:32 → 90
    SCY; Intercrine alpha family (small cytokine C-X-C) (chemokine CXC)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    35983288..35986729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187614.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    217852..221293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    36931192..36934633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_004166.4: Suppressed sequence

    Description
    NM_004166.4: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q16627.1 GenPept UniProtKB/Swiss-Prot:Q16627

Gene LinkOut

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Chemical Information
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