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Nmu neuromedin U [ Rattus norvegicus (Norway rat) ]

Gene ID: 63887, updated on 2-Nov-2024

Summary

Official Symbol
Nmuprovided by RGD
Official Full Name
neuromedin Uprovided by RGD
Primary source
RGD:68388
See related
EnsemblRapid:ENSRNOG00000002164 AllianceGenome:RGD:68388
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Enables type 1 neuromedin U receptor binding activity and type 2 neuromedin U receptor binding activity. Involved in several processes, including negative regulation of digestive system process; positive regulation of cell communication; and positive regulation of sensory perception of pain. Acts upstream of or within neuropeptide signaling pathway. Located in terminal bouton. Used to study obesity. Human ortholog(s) of this gene implicated in obesity. Orthologous to human NMU (neuromedin U). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 3.1), Testes (RPKM 1.8) and 8 other tissues See more
Orthologs
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Genomic context

See Nmu in Genome Data Viewer
Location:
14p11
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (32198789..32226397)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (31844564..31872196)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (34353683..34381968)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 1 like Neighboring gene uncharacterized LOC102556008 Neighboring gene uncharacterized LOC120096594 Neighboring gene phosducin-like 2 Neighboring gene uncharacterized LOC134481741 Neighboring gene clock circadian regulator

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables neuromedin U receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables neuromedin U receptor binding IDA
Inferred from Direct Assay
more info
PubMed 
enables neuromedin U receptor binding IEA
Inferred from Electronic Annotation
more info
 
enables type 1 neuromedin U receptor binding IDA
Inferred from Direct Assay
more info
PubMed 
enables type 1 neuromedin U receptor binding IEA
Inferred from Electronic Annotation
more info
 
enables type 1 neuromedin U receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables type 2 neuromedin U receptor binding IDA
Inferred from Direct Assay
more info
PubMed 
enables type 2 neuromedin U receptor binding IEA
Inferred from Electronic Annotation
more info
 
enables type 2 neuromedin U receptor binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in eating behavior IDA
Inferred from Direct Assay
more info
PubMed 
involved_in energy homeostasis IDA
Inferred from Direct Assay
more info
PubMed 
involved_in energy homeostasis ISO
Inferred from Sequence Orthology
more info
 
involved_in gastric acid secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of eating behavior IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of feeding behavior IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of gastric acid secretion IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of gastric emptying IDA
Inferred from Direct Assay
more info
PubMed 
involved_in neuropeptide signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within neuropeptide signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
involved_in neuropeptide signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in neuropeptide signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in photoperiodism IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in positive regulation of cytosolic calcium ion concentration IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of heart rate IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of heat generation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of hormone secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of prolactin secretion IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of sensory perception of pain IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of smooth muscle contraction IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of smooth muscle contraction IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of smooth muscle contraction IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of stomach fundus smooth muscle contraction IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of synaptic transmission IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of synaptic transmission IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of systemic arterial blood pressure IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of circadian sleep/wake cycle, sleep IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of feeding behavior ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of grooming behavior IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of grooming behavior ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of smooth muscle contraction IEA
Inferred from Electronic Annotation
more info
 
involved_in temperature homeostasis ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in terminal bouton IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in terminal bouton IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
neuromedin-U
Names
neuromedin U precursor-related peptide/neuromedin U preproprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_022239.3NP_071575.1  neuromedin-U precursor

    See identical proteins and their annotated locations for NP_071575.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000014
    UniProtKB/Swiss-Prot
    P12760
    UniProtKB/TrEMBL
    A0A250SHE5, A6JCY2
    Related
    ENSRNOP00000103523.1, ENSRNOT00000159345.1
    Conserved Domains (1) summary
    pfam02070
    Location:144166
    NMU; Neuromedin U

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    32198789..32226397
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006250872.5XP_006250934.1  neuromedin-U isoform X1

    UniProtKB/TrEMBL
    A0A8L2UHE1, A6JCY2
    Related
    ENSRNOP00000002941.5, ENSRNOT00000002941.6
    Conserved Domains (1) summary
    smart00084
    Location:134156
    NMU; Neuromedin U

RNA

  1. XR_001841028.3 RNA Sequence