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DSEL-AS1 DSEL antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 643542, updated on 10-Oct-2023

Summary

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Official Symbol
DSEL-AS1provided by HGNC
Official Full Name
DSEL antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55325
See related
Ensembl:ENSG00000265533 AllianceGenome:HGNC:55325
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See DSEL-AS1 in Genome Data Viewer
Location:
18q22.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (67516546..67899619)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (67735138..68118061)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (65183783..65566856)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9535 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:64794127-64794883 Neighboring gene microRNA 5011 Neighboring gene ribosomal protein L31 pseudogene 9 Neighboring gene MPRA-validated peak3178 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:65117908-65118467 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:65118468-65119026 Neighboring gene NANOG hESC enhancer GRCh37_chr18:65249667-65250228 Neighboring gene uncharacterized LOC105372174 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:65303557-65304256 Neighboring gene dermatan sulfate epimerase like Neighboring gene uncharacterized LOC105372173 Neighboring gene uncharacterized LOC105372172 Neighboring gene selenocysteine insertion sequence-binding protein 2-like Neighboring gene family with sequence similarity 32 member D, pseudogene Neighboring gene myotubularin related protein 14 pseudogene Neighboring gene long intergenic non-protein coding RNA 1903 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:65772919-65773527 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:65888487-65889038 Neighboring gene long intergenic non-protein coding RNA 1912 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:66103358-66104557 Neighboring gene aldo-keto reductase family 1 member B10 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide association study of recurrent early-onset major depressive disorder. Shi J, et al. Mol Psychiatry, 2011 Feb. PMID 20125088, Free PMC Article
  2. Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2. Winham SJ, et al. Mol Psychiatry, 2014 Sep. PMID 24322204
  3. Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations. Lasky-Su J, et al. Am J Med Genet B Neuropsychiatr Genet, 2008 Dec 5. PMID 18821565
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.
EBI GWAS Catalog
Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.
EBI GWAS Catalog
Genome-wide association study of recurrent early-onset major depressive disorder.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033921.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC114689, BC053410
    Related
    ENST00000583687.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    67516546..67899619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    67735138..68118061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases