CTAGE9 CTAGE family member 9 [Homo sapiens (human)] - Gene

Summary

Official Symbol: CTAGE9provided by HGNC
Official Full Name: CTAGE family member 9provided by HGNC
Primary source: HGNC:HGNC:37275
See related: Ensembl:ENSG00000236761 AllianceGenome:HGNC:37275
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary: Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; protein secretion; and vesicle cargo loading. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum exit site and endoplasmic reticulum membrane. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:: 6q23.2

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	6	NC_000006.12 (131708441..131711017, complement)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	6	NC_060930.1 (132902914..132905490, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	6	NC_000006.11 (132029581..132032157, complement)

Chromosome 6 - NC_000006.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Gene Ontology Provided by GOA

Process	Evidence Code	Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in protein secretion	IBA Inferred from Biological aspect of Ancestor more info
involved_in vesicle cargo loading	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in endoplasmic reticulum exit site	IBA Inferred from Biological aspect of Ancestor more info
is_active_in endoplasmic reticulum membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: cTAGE family member 9

Names: cutaneous T-cell lymphoma-associated antigen 9; protein cTAGE-9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001145659.1 → NP_001139131.1 cTAGE family member 9

See identical proteins and their annotated locations for NP_001139131.1

Status: VALIDATED

Source sequence(s)

AC005587

Consensus CDS

CCDS47475.1

UniProtKB/Swiss-Prot

A4FU28

UniProtKB/TrEMBL

A0A2R8YE69

Related

ENSP00000395587.2, ENST00000314099.10

Conserved Domains (4) summary

pfam04156
Location:43 → 188

IncA; IncA protein

pfam07926
Location:123 → 244

TPR_MLP1_2; TPR/MLP1/MLP2-like protein

pfam10211
Location:157 → 229

Ax_dynein_light; Axonemal dynein light chain

pfam15233
Location:338 → 445

SYCE1; Synaptonemal complex central element protein 1