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FAM25C family with sequence similarity 25 member C [ Homo sapiens (human) ]

Gene ID: 644054, updated on 8-Nov-2023

Summary

Official Symbol
FAM25Cprovided by HGNC
Official Full Name
family with sequence similarity 25 member Cprovided by HGNC
Primary source
HGNC:HGNC:23586
See related
Ensembl:ENSG00000276430 AllianceGenome:HGNC:23586
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
bA164N7.4
Expression
Biased expression in skin (RPKM 22.8), esophagus (RPKM 4.1) and 2 other tissues See more
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Genomic context

Location:
10q11.22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (47995322..47999791, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (48844223..48848691, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (49203355..49207825, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene annexin A8 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:47089387-47089886 Neighboring gene uncharacterized LOC124902423 Neighboring gene neuropeptide Y receptor Y4-2 Neighboring gene Sharpr-MPRA regulatory region 8752 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:47136815-47137314 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:47769223-47769865 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:49196054-49197004 Neighboring gene NANOG hESC enhancer GRCh37_chr10:49202415-49202942 Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 12, pseudogene Neighboring gene RNA, 5S ribosomal pseudogene 315

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
protein FAM25C
Names
Protein FAM25G
protein FAM25

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001137548.3NP_001131020.1  protein FAM25C

    See identical proteins and their annotated locations for NP_001131020.1

    Status: VALIDATED

    Source sequence(s)
    AC245041, BX093303
    Consensus CDS
    CCDS76299.1
    UniProtKB/Swiss-Prot
    B2RV02, B3EWG3, B3EWG5, B3EWG6, Q5VTM1
    UniProtKB/TrEMBL
    B7ZW47
    Related
    ENSP00000485370.1, ENST00000617224.3
    Conserved Domains (1) summary
    pfam15825
    Location:2488
    FAM25; FAM25 family

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    47995322..47999791 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160001.1 Reference GRCh38.p14 PATCHES

    Range
    213604..218073 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    48844223..48848691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)