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LSM3P3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 647302, updated on 17-Sep-2024

Summary

Official Symbol
LSM3P3provided by HGNC
Official Full Name
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:44348
See related
AllianceGenome:HGNC:44348
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See LSM3P3 in Genome Data Viewer
Location:
2p11.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (85101977..85102699, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (85103861..85104583, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (85329100..85329822, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11693 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:85201557-85202098 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:85202099-85202640 Neighboring gene potassium channel modulatory factor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16115 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:85250397-85251081 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:85304907-85305408 Neighboring gene long intergenic non-protein coding RNA 1964 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:85305409-85305908 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:85346954-85347553 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11694 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:85360550-85361124 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:85361700-85362274 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:85362275-85362848 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:85386601-85387191 Neighboring gene transcription factor 7 like 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:85390033-85390532 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:85408515-85408652 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:85408761-85409408 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:85416914-85417415 Neighboring gene TCF7L1 intronic transcript 1 Neighboring gene RNA, U6 small nuclear 674, pseudogene

Genomic regions, transcripts, and products

General gene information

Other Names

  • LSM3 U6 small nuclear RNA and mRNA degradation associated pseudogene 3
  • LSM3 homolog, U6 small nuclear RNA associated pseudogene 3
  • LSM3 pseudogene 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_012903.2 

    Range
    101..823
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    85101977..85102699 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791763.1 Reference GRCh38.p14 PATCHES

    Range
    28163..28885 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    85103861..85104583 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)