TSSC2 tumor suppressing subtransferable candidate 2 (pseudogene) [Homo sapiens (human)] - Gene

Summary

Official Symbol: TSSC2provided by HGNC
Official Full Name: tumor suppressing subtransferable candidate 2 (pseudogene)provided by HGNC
Primary source: HGNC:HGNC:12384
See related: Ensembl:ENSG00000290960 MIM:608999; AllianceGenome:HGNC:12384
Gene type: pseudo
RefSeq status: PROVISIONAL
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression: Ubiquitous expression in fat (RPKM 1.6), ovary (RPKM 1.5) and 21 other tissues See more
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Genomic context

Location:: 11p15.4

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	11	NC_000011.10 (3380961..3409148)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	11	NC_060935.1 (3426355..3454559)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	11	NC_000011.9 (3402191..3430378)

Chromosome 11 - NC_000011.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

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General gene information

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Markers

REN81761 (e-PCR)
- UniSTS:406559

REN81051 (e-PCR)
- UniSTS:405849

SHGC-51031 (e-PCR)
- UniSTS:22173

a06503sbk (e-PCR)
- UniSTS:96247

Other Names

asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase) (ALG1) pseudogene
asparagine-linked glycosylation 1-like pseudogene
beta-1,4-mannosyltransferase pseudogene
tumor-supressing STF cDNA 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.