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[ Saccharomyces cerevisiae S288C ]

Gene ID: 65052917, updated on 11-Sep-2024

Summary

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Primary source
SGD:S000303814
Locus tag
YNCM0001W
See related
AllianceGenome:SGD:S000303814
Gene type
ncRNA
RNA name
antisense_RNA
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
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Genomic context

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Location:
chromosome: XIII
Exon count:
1
Sequence:
Chromosome: XIII; NC_001145.3 (23564..26578)

Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene hydroxymethylglutaryl-CoA synthase Neighboring gene cytochrome-b5 reductase Neighboring gene alpha-tubulin TUB3 Neighboring gene phosphate transporter PHO84 Neighboring gene uncharacterized protein Neighboring gene Rag GTPase GTR1 Neighboring gene NADH-ubiquinone reductase (H(+)-translocating) NDI1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001145.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expansion of antisense lncRNA transcriptomes in budding yeast species since the loss of RNAi. Alcid EA, et al. Nat Struct Mol Biol, 2016 May. PMID 27018804, Free PMC Article
  2. Bimodal expression of PHO84 is modulated by early termination of antisense transcription. Castelnuovo M, et al. Nat Struct Mol Biol, 2013 Jul. PMID 23770821, Free PMC Article
  3. Decapping of long noncoding RNAs regulates inducible genes. Geisler S, et al. Mol Cell, 2012 Feb 10. PMID 22226051, Free PMC Article
  4. Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae. Camblong J, et al. Cell, 2007 Nov 16. PMID 18022365

GeneRIFs: Gene References Into Functions

General gene information

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  • Antisense to PHO84 and beginning of YML122C; represses transcription of PHO84 through histone deacetylation

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001145.3 Reference assembly

    Range
    23564..26578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_172477.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

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