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CFLAR-AS1 CFLAR antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 65072, updated on 10-Oct-2023

Summary

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Official Symbol
CFLAR-AS1provided by HGNC
Official Full Name
CFLAR antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:14437
See related
Ensembl:ENSG00000226312 AllianceGenome:HGNC:14437
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ALS2CR10
Expression
Ubiquitous expression in appendix (RPKM 5.2), fat (RPKM 5.2) and 25 other tissues See more
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Genomic context

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See CFLAR-AS1 in Genome Data Viewer
Location:
2q33.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (201140289..201157792, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (201623732..201641233, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (202005012..202022515, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373836 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16974 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12229 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16975 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:201983171-201983674 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12230 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:201988912-201989135 Neighboring gene NANOG hESC enhancer GRCh37_chr2:201989404-201989905 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:201990328-201990574 Neighboring gene CASP8 and FADD like apoptosis regulator Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16978 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:202002357-202003313 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:202003314-202004270 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:202004271-202005227 Neighboring gene inosine monophosphate dehydrogenase 1 pseudogene 10 Neighboring gene RNA, U7 small nuclear 45 pseudogene Neighboring gene Sharpr-MPRA regulatory region 10379 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:202014382-202015067 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:202015298-202016497 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16979 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16980 Neighboring gene RPL38 pseudogene 5 Neighboring gene caspase 10 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16981 Neighboring gene MT-ND5 pseudogene 25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Three Circulating LncRNA Predict Early Progress of Esophageal Squamous Cell Carcinoma. Hu HB, et al. Cell Physiol Biochem, 2016. PMID 27855375
  2. A gene encoding a putative GTPase regulator is mutated in familial amyotrophic lateral sclerosis 2. Hadano S, et al. Nat Genet, 2001 Oct. PMID 11586298

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • CFLAR antisense RNA 1 (non-protein coding)
  • amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040030.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AB053312
    Related
    ENST00000415011.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    201140289..201157792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    201623732..201641233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases