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BTF3P5 basic transcription factor 3 pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 652959, updated on 17-Sep-2024

Summary

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Official Symbol
BTF3P5provided by HGNC
Official Full Name
basic transcription factor 3 pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:38565
See related
AllianceGenome:HGNC:38565
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See BTF3P5 in Genome Data Viewer
Location:
2p16.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (55434896..55435719, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (55432095..55432918, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (55662032..55662855, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:55509381-55510272 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:55516372-55516872 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:55516873-55517373 Neighboring gene prolyl-tRNA synthetase associated domain containing 1, pseudogene Neighboring gene Sharpr-MPRA regulatory region 7699 Neighboring gene coiled-coil domain containing 88A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15780 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:55530138-55530638 Neighboring gene uncharacterized LOC124907768 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:55635985-55636565 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11497 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11498 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11499 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:55669177-55669678 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:55669679-55670178 Neighboring gene RNA, U6 small nuclear 775, pseudogene Neighboring gene RNA, U6 small nuclear 221, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_005363.5 

    Range
    101..924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    55434896..55435719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    55432095..55432918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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