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AGAP14P ArfGAP with GTPase domain, ankyrin repeat and PH domain 14, pseudogene [ Homo sapiens (human) ]

Gene ID: 653259, updated on 17-Sep-2024

Summary

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Official Symbol
AGAP14Pprovided by HGNC
Official Full Name
ArfGAP with GTPase domain, ankyrin repeat and PH domain 14, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:23660
See related
AllianceGenome:HGNC:23660
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AGAP14; CTGLF11P; bA145E20.1
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Genomic context

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See AGAP14P in Genome Data Viewer
Location:
10q11.22
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (46337261..46357864)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (47223298..47243907)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (47192908..47213477, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2352 Neighboring gene uncharacterized LOC105378577 Neighboring gene ANTXR like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47669003-47669503 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47671191-47671769 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47676205-47676704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47679859-47680464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47680465-47681068 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:47685074-47685574 Neighboring gene protein FAM25 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47752508-47753049 Neighboring gene annexin A8 like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Oncogenic functions of protein kinase D2 and D3 in regulating multiple cancer-related pathways in breast cancer. Liu Y, et al. Cancer Med, 2019 Feb. PMID 30652415, Free PMC Article
  2. The DNA sequence and comparative analysis of human chromosome 10. Deloukas P, et al. Nature, 2004 May 27. PMID 15164054
  3. New interaction partners for Nek4.1 and Nek4.2 isoforms: from the DNA damage response to RNA splicing. Basei FL, et al. Proteome Sci, 2015. PMID 25798074, Free PMC Article
  4. Protein interaction landscapes revealed by advanced in vivo cross-linking-mass spectrometry. Wheat A, et al. Proc Natl Acad Sci U S A, 2021 Aug 10. PMID 34349018, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Other Names

  • Putative centaurin-gamma-like family member 11P
  • centaurin, gamma-like family, member 11 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_165820.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC244230

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    46337261..46357864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    47223298..47243907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_005806.6: Suppressed sequence

    Description
    NG_005806.6: This RefSeq was removed because there is sufficient evidence that this locus is transcribed.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
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