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TEX28P2 TEX28 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 653363, updated on 10-Oct-2023

Summary

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Official Symbol
TEX28P2provided by HGNC
Official Full Name
TEX28 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:33357
See related
Ensembl:ENSG00000277008 AllianceGenome:HGNC:33357
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
pTEX; CXorf2B
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Genomic context

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See TEX28P2 in Genome Data Viewer
Location:
Xq28
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (154159207..154180155, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (152432860..152453816, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (153424682..153445643, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:153297889-153298431 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:153298432-153298975 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:153298976-153299518 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chrX:153301355-153301920 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:153306499-153306999 Neighboring gene methyl-CpG binding protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30053 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21083 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:153362776-153363014 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21085 Neighboring gene Sharpr-MPRA regulatory region 3572 Neighboring gene opsin locus control region Neighboring gene opsin 1, long wave sensitive Neighboring gene opsin 1, medium wave sensitive Neighboring gene TEX28 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:153490111-153490612 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:153490613-153491112 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:153495190-153495690 Neighboring gene opsin 1, medium wave sensitive 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An insertion/deletion TEX28 polymorphism and its application to analysis of red/green visual pigment gene arrays. Ueyama H, et al. J Hum Genet, 2004. PMID 15378397
  2. Identification of a gene within the tandem array of red and green color pigment genes. Hanna MC, et al. Genomics, 1997 Aug 1. PMID 9268643
  3. Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome. Chen YT, et al. Genes Chromosomes Cancer, 2006 Apr. PMID 16382448

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • testis expressed 28 pseudogene 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_005788.2 

    Range
    94..21042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    154159207..154180155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    152432860..152453816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials