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LOC653513 phosphodiesterase 4D interacting protein-like [ Homo sapiens (human) ]

Gene ID: 653513, updated on 17-Jun-2024

Summary

Gene symbol
LOC653513
Gene description
phosphodiesterase 4D interacting protein-like
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in heart (RPKM 49.2), brain (RPKM 15.9) and 3 other tissues See more
Orthologs
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Genomic context

See LOC653513 in Genome Data Viewer
Location:
1q21.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (149197559..149201146, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (145855208..145858795, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (144676437..144680025, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904581 Neighboring gene RNA, variant U1 small nuclear 24 Neighboring gene uncharacterized LOC124904397 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:144691669-144692454 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144706370-144707235 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144983763-144984287 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:144709889-144710390 Neighboring gene uncharacterized LOC124904395 Neighboring gene SEC22 homolog B2, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037182.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AJ708549, BM128010, BX358804, EL953210

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    149197559..149201146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    145855208..145858795 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)