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HSPB1P1 heat shock protein family B (small) member 1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 653553, updated on 17-Sep-2024

Summary

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Official Symbol
HSPB1P1provided by HGNC
Official Full Name
heat shock protein family B (small) member 1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:5251
See related
AllianceGenome:HGNC:5251
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HSPBL2
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Genomic context

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See HSPB1P1 in Genome Data Viewer
Location:
9q21.13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (72007759..72008136, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (84158399..84158776, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (74622675..74623052, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene abhydrolase domain containing 17B, depalmitoylase Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19945 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28455 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28456 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28457 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:74534388-74534894 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:74535401-74535906 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:74535907-74536412 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:74536413-74536918 Neighboring gene chromosome 9 open reading frame 85 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:74568411-74569057 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:74578682-74579426 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:74579427-74580171 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:74604827-74606026 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:74622307-74622838 Neighboring gene Sharpr-MPRA regulatory region 3495 Neighboring gene uncharacterized LOC101927108 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:74663139-74664338 Neighboring gene chromosome 9 open reading frame 57 Neighboring gene basic transcription factor 3 pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Heat shock protein 27 gene: chromosomal and molecular location and relationship to Williams syndrome. Stock AD, et al. Am J Med Genet A, 2003 Jul 30. PMID 12838549
  2. Chromosomal assignments of human 27-kDa heat shock protein gene family. McGuire SE, et al. Somat Cell Mol Genet, 1989 Mar. PMID 2538929
  3. Pseudogene HSPB1P1 contributes to renal cell carcinoma proliferation and metastasis by targeting miR-296-5p to regulate HMGA1 expression. Chen Z, et al. Cell Biol Int, 2021 Dec. PMID 34431162

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Pseudogene HSPB1P1 contributes to renal cell carcinoma proliferation and metastasis by targeting miR-296-5p to regulate HMGA1 expression.
    Title: Pseudogene HSPB1P1 contributes to renal cell carcinoma proliferation and metastasis by targeting miR-296-5p to regulate HMGA1 expression.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • heat shock 27kD protein-like 2
  • heat shock 27kDa protein 1 pseudogene 1
  • heat shock 27kDa protein-like 2 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_013115.2 

    Range
    101..478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    72007759..72008136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    84158399..84158776 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_024392.1: Suppressed sequence

    Description
    NR_024392.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is not expressed.
Nucleotide Protein
Heading Accession and Version

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