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GOLGA6D golgin A6 family member D [ Homo sapiens (human) ]

Gene ID: 653643, updated on 2-Nov-2024

Summary

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Official Symbol
GOLGA6Dprovided by HGNC
Official Full Name
golgin A6 family member Dprovided by HGNC
Primary source
HGNC:HGNC:32204
See related
Ensembl:ENSG00000140478 AllianceGenome:HGNC:32204
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be involved in Golgi organization. Predicted to be located in Golgi apparatus. Predicted to be active in Golgi cis cisterna; Golgi cisterna membrane; and cis-Golgi network. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis (RPKM 15.6) See more
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Genomic context

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See GOLGA6D in Genome Data Viewer
Location:
15q24.2
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (75276127..75295530)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (73146190..73165591)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (75575176..75587871)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:75546366-75546894 Neighboring gene NIFK pseudogene 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:75551293-75551823 Neighboring gene golgin A6 family member C Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:75558211-75559074 Neighboring gene RNA, 7SL, cytoplasmic 489, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:75568091-75568622 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:75569155-75569686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:75586327-75587004 Neighboring gene RNA, 7SL, cytoplasmic 327, pseudogene Neighboring gene dynamin 1 pseudogene 34 Neighboring gene acidic nuclear phosphoprotein 32 family member B pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Analysis of the DNA sequence and duplication history of human chromosome 15. Zody MC, et al. Nature, 2006 Mar 30. PMID 16572171
  2. In-Depth In Vivo Crosslinking in Minutes by a Compact, Membrane-Permeable, and Alkynyl-Enrichable Crosslinker. Gao H, et al. Anal Chem, 2022 May 31. PMID 35575683
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi cis cisterna IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in Golgi cisterna membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cis-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
golgin subfamily A member 6D
Names
golgi autoantigen, golgin subfamily a, 6D
putative golgin subfamily A member 6D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145224.3 → NP_001138696.1  golgin subfamily A member 6D

    See identical proteins and their annotated locations for NP_001138696.1

    Status: VALIDATED

    Source sequence(s)
    AC068338
    Consensus CDS
    CCDS45308.1
    UniProtKB/Swiss-Prot
    P0CG33
    UniProtKB/TrEMBL
    A2VDJ1
    Related
    ENSP00000391085.3, ENST00000434739.4
    Conserved Domains (2) summary
    pfam01496
    Location:264 → 346
    V_ATPase_I; V-type ATPase 116kDa subunit family
    pfam15070
    Location:217 → 686
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    75276127..75295530
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047432965.1 → XP_047288921.1  golgin subfamily A member 6D isoform X1

    UniProtKB/Swiss-Prot
    P0CG33

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    73146190..73165591
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054378659.1 → XP_054234634.1  golgin subfamily A member 6D isoform X1

    UniProtKB/Swiss-Prot
    P0CG33
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0CG33.1 GenPept UniProtKB/Swiss-Prot:P0CG33

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
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Research Materials