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GOLGA8M golgin A8 family member M [ Homo sapiens (human) ]

Gene ID: 653720, updated on 3-Apr-2024

Summary

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Official Symbol
GOLGA8Mprovided by HGNC
Official Full Name
golgin A8 family member Mprovided by HGNC
Primary source
HGNC:HGNC:44404
See related
Ensembl:ENSG00000188626 AllianceGenome:HGNC:44404
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be involved in Golgi organization. Predicted to be active in Golgi cis cisterna; Golgi cisterna membrane; and cis-Golgi network. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in thyroid (RPKM 8.4), testis (RPKM 6.0) and 20 other tissues See more
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Genomic context

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Location:
15q13.1
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (28698583..28713333, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (26475295..26489133, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (28943729..28957567, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene putative HERC2-like protein 3 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr15:28905686-28906186 Neighboring gene HERC2 pseudogene 9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:28911197-28911697 Neighboring gene HECT and RLD domain containing E3 ubiquitin protein ligase 2 pseudogene Neighboring gene uncharacterized LOC107984746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:28947514-28948014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:28948015-28948515 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:28950433-28951142 Neighboring gene RNA, 7SL, cytoplasmic 719, pseudogene Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:28989516-28990108 Neighboring gene WHAMM pseudogene 2 Neighboring gene zinc finger FYVE-type containing 9 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Analysis of the DNA sequence and duplication history of human chromosome 15. Zody MC, et al. Nature, 2006 Mar 30. PMID 16572171
  2. Identification of phagocytosis regulators using magnetic genome-wide CRISPR screens. Haney MS, et al. Nat Genet, 2018 Dec. PMID 30397336, Free PMC Article
  3. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al. Proc Natl Acad Sci U S A, 2000 Mar 28. PMID 10737800, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi cis cisterna IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in Golgi cisterna membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cis-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
golgin subfamily A member 8M
Names
Putative golgin subfamily A member 6-like protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001282468.3 → NP_001269397.1  golgin subfamily A member 8M

    See identical proteins and their annotated locations for NP_001269397.1

    Status: VALIDATED

    Source sequence(s)
    AC055876
    Consensus CDS
    CCDS61572.1
    UniProtKB/Swiss-Prot
    A6NCM5, F8WBD5, H3BSY2
    UniProtKB/TrEMBL
    A0A1B0GVY7
    Related
    ENSP00000456927.1, ENST00000563027.2
    Conserved Domains (2) summary
    pfam15070
    Location:226 → 622
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5
    cl19219
    Location:175 → 291
    DUF342; Protein of unknown function (DUF342)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    28698583..28713333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005268285.6 → XP_005268342.1  golgin subfamily A member 8M isoform X2

    UniProtKB/TrEMBL
    A0A1B0GVY7
    Conserved Domains (2) summary
    pfam15070
    Location:272 → 645
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5
    cl19219
    Location:221 → 337
    DUF342; Protein of unknown function (DUF342)

  2. XM_005268284.6 → XP_005268341.1  golgin subfamily A member 8M isoform X1

    UniProtKB/TrEMBL
    A0A1B0GVY7
    Conserved Domains (2) summary
    pfam15070
    Location:272 → 668
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5
    cl19219
    Location:221 → 337
    DUF342; Protein of unknown function (DUF342)

  3. XM_011521951.4 → XP_011520253.1  golgin subfamily A member 8M isoform X4

    See identical proteins and their annotated locations for XP_011520253.1

    Conserved Domains (1) summary
    pfam15070
    Location:75 → 471
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

  4. XM_006720654.4 → XP_006720717.1  golgin subfamily A member 8M isoform X3

    UniProtKB/TrEMBL
    A0A1B0GVY7
    Conserved Domains (2) summary
    pfam15070
    Location:213 → 609
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5
    cl19219
    Location:162 → 278
    DUF342; Protein of unknown function (DUF342)

  5. XM_011521952.4 → XP_011520254.1  golgin subfamily A member 8M isoform X5

    Conserved Domains (2) summary
    pfam15070
    Location:272 → 528
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5
    cl19219
    Location:221 → 337
    DUF342; Protein of unknown function (DUF342)

  6. XM_011521953.4 → XP_011520255.1  golgin subfamily A member 8M isoform X6

    See identical proteins and their annotated locations for XP_011520255.1

    Conserved Domains (1) summary
    cl19219
    Location:221 → 337
    DUF342; Protein of unknown function (DUF342)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332701.1 Reference GRCh38.p14 PATCHES

    Range
    860585..880514 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054331816.1 → XP_054187791.1  golgin subfamily A member 8M isoform X4

  2. XM_054331811.1 → XP_054187786.1  golgin subfamily A member 8M isoform X2

  3. XM_054331810.1 → XP_054187785.1  golgin subfamily A member 8M isoform X1

  4. XM_054331813.1 → XP_054187788.1  golgin subfamily A member 8M isoform X4

  5. XM_054331812.1 → XP_054187787.1  golgin subfamily A member 8M isoform X3

  6. XM_054331814.1 → XP_054187789.1  golgin subfamily A member 8M isoform X5

  7. XM_054331815.1 → XP_054187790.1  golgin subfamily A member 8M isoform X6

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187660.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    974371..989121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054330039.1 → XP_054186014.1  golgin subfamily A member 8M isoform X2

  2. XM_054330038.1 → XP_054186013.1  golgin subfamily A member 8M isoform X1

  3. XM_054330041.1 → XP_054186016.1  golgin subfamily A member 8M isoform X4

  4. XM_054330040.1 → XP_054186015.1  golgin subfamily A member 8M isoform X3

  5. XM_054330042.1 → XP_054186017.1  golgin subfamily A member 8M isoform X5

  6. XM_054330043.1 → XP_054186018.1  golgin subfamily A member 8M isoform X6

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    26475295..26489133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054378663.1 → XP_054234638.1  golgin subfamily A member 8M isoform X4

  2. XM_054378661.1 → XP_054234636.1  golgin subfamily A member 8M isoform X2

  3. XM_054378660.1 → XP_054234635.1  golgin subfamily A member 8M isoform X1

  4. XM_054378662.1 → XP_054234637.1  golgin subfamily A member 8M isoform X3

  5. XM_054378664.1 → XP_054234639.1  golgin subfamily A member 8M isoform X5

  6. XM_054378665.1 → XP_054234640.1  golgin subfamily A member 8M isoform X6

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
H3BSY2.1 GenPept UniProtKB/Swiss-Prot:H3BSY2

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