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LOC6572237 PAX3- and PAX7-binding protein 1 [ Drosophila mojavensis ]

Gene ID: 6572237, updated on 10-May-2024

Summary

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Gene symbol
LOC6572237
Gene description
PAX3- and PAX7-binding protein 1
Locus tag
Dmoj_GI23661
See related
EnsemblRapid:LOC6572237
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila mojavensis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Also known as
GI23661; GI23661-PA; GI23661-PB; GI23661-PC; GI23661-PD
Orthologs
fruit fly all
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Genomic context

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See LOC6572237 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current ASM1815372v1 (GCF_018153725.1) Unplaced Scaffold NW_025318726.1 (2959913..2964494)
101 previous assembly dmoj_caf1 (GCF_000005175.2) Unplaced Scaffold NW_001979112.1 (3690831..3695404, complement)

NW_025318726.1Genomic Context describing neighboring genes Neighboring gene nuclear envelope pore membrane protein POM 121 Neighboring gene C-terminal Src kinase Neighboring gene UFM1 specific ligase 1 Neighboring gene Kip1 ubiquitination-promoting complex subunit 1 Neighboring gene Guanylyl cyclase at 88E Neighboring gene uncharacterized LOC6572233 Neighboring gene uncharacterized LOC122756859

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal complex disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PAX3- and PAX7-binding protein 1; uncharacterized protein LOC6572237
Names
Dmoj\GI23661
Dmoj\GI23661-PA
Dmoj\GI23661-PB
Dmoj\GI23661-PC
Dmoj\GI23661-PD
dmoj_GLEANR_8785

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila mojavensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815372v1

Genomic

  1. NW_025318726.1 Reference ASM1815372v1

    Range
    2959913..2964494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015166290.3 → XP_015021776.1  PAX3- and PAX7-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    B4KDK6
    Related
    XP_015021776.1, XM_015166290.3
    Conserved Domains (1) summary
    pfam07842
    Location:656 → 866
    GCFC; GC-rich sequence DNA-binding factor-like protein

  2. XM_015166291.3 → XP_015021777.1  uncharacterized protein LOC6572237 isoform X3

    UniProtKB/TrEMBL
    A0A0Q9WX82
    Related
    XP_015021777.1, XM_015166291.3

  3. XM_044007754.1 → XP_043863689.1  PAX3- and PAX7-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    B4KDK6
    Related
    XP_043863689.1, XM_044007754.1
    Conserved Domains (1) summary
    pfam07842
    Location:656 → 866
    GCFC; GC-rich sequence DNA-binding factor-like protein

  4. XM_001998343.4 → XP_001998379.1  PAX3- and PAX7-binding protein 1 isoform X1

    See identical proteins and their annotated locations for XP_001998379.1

    UniProtKB/TrEMBL
    B4KDK6
    Related
    XP_001998379.1, XM_001998343.4
    Conserved Domains (1) summary
    pfam07842
    Location:656 → 866
    GCFC; GC-rich sequence DNA-binding factor-like protein

  5. XM_015166292.3 → XP_015021778.1  PAX3- and PAX7-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A0Q9WXA5
    Related
    XP_015021778.1, XM_015166292.3
    Conserved Domains (2) summary
    pfam07842
    Location:422 → 632
    GCFC; GC-rich sequence DNA-binding factor-like protein
    pfam15458
    Location:3 → 147
    NTR2; Nineteen complex-related protein 2
Nucleotide Protein
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