1810009A15Rik RIKEN cDNA 1810009A15 gene [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: 1810009A15Rikprovided by MGI
Official Full Name: RIKEN cDNA 1810009A15 geneprovided by MGI
Primary source: MGI:MGI:1913526
See related: Ensembl:ENSMUSG00000071653 AllianceGenome:MGI:1913526
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary: This gene shares three exons in common with another gene, LBH domain containing 1 (GeneID:102308570), but the encoded protein uses a reading frame that is different from that of the LBH domain containing 1 gene. [provided by RefSeq, Nov 2017]
Expression: Broad expression in CNS E11.5 (RPKM 37.2), liver E14 (RPKM 28.7) and 25 other tissues See more
Orthologs: human all
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Genomic context

Location:: 19 A; 19 5.93 cM

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	19	NC_000085.7 (8866247..8868123)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	19	NC_000085.6 (8888883..8890759)

Chromosome 19 - NC_000085.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: uncharacterized protein C11orf98 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_025463.3 → NP_079739.1 uncharacterized protein C11orf98 homolog

See identical proteins and their annotated locations for NP_079739.1

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the protein-coding transcript.

Source sequence(s)

AV210692, BC058702, BY264380

Consensus CDS

CCDS29555.1

UniProtKB/Swiss-Prot

Q9D937

UniProtKB/TrEMBL

Q9CSS6

Related

ENSMUSP00000093970.4, ENSMUST00000096251.10

RNA

NR_104416.1 RNA Sequence

Status: VALIDATED

Description

Transcript Variant: This variant (2) differs at the 5' end compared to variant 1. It is represented as non-coding because the use of the 5'-most translational start codon, as used in variant 1, renders this transcript a candidate for nonsense-mediated mRNA decay (NMD).

Source sequence(s)

AV210692, BC058702, BY264380, BY273399

Related

ENSMUST00000186647.7