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1700025K04Rik RIKEN cDNA 1700025K04 gene [ Mus musculus (house mouse) ]

Gene ID: 66334, updated on 22-Oct-2024

Summary

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Official Symbol
1700025K04Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700025K04 geneprovided by MGI
Primary source
MGI:MGI:1913584
See related
Ensembl:ENSMUSG00000112482 AllianceGenome:MGI:1913584
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 5.3) See more
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Genomic context

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See 1700025K04Rik in Genome Data Viewer
Location:
10; 10 D3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (126207844..126210203)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (126371975..126374334)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_28178 Neighboring gene predicted gene 4510 Neighboring gene RIKEN cDNA 1700021G15 gene Neighboring gene STARR-seq mESC enhancer starr_28179 Neighboring gene STARR-seq mESC enhancer starr_28180 Neighboring gene STARR-seq mESC enhancer starr_28181 Neighboring gene STARR-seq mESC enhancer starr_28182 Neighboring gene STARR-positive B cell enhancer ABC_E6937 Neighboring gene STARR-positive B cell enhancer ABC_E11465 Neighboring gene STARR-seq mESC enhancer starr_28183 Neighboring gene STARR-seq mESC enhancer starr_28184 Neighboring gene STARR-seq mESC enhancer starr_28185 Neighboring gene STARR-seq mESC enhancer starr_28186 Neighboring gene predicted gene, 40797 Neighboring gene microRNA 378d

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166080.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC132415
    Related
    ENSMUST00000374819.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    126207844..126210203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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