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Lce3b late cornified envelope 3B [ Mus musculus (house mouse) ]

Gene ID: 66344, updated on 2-Nov-2024

Summary

Official Symbol
Lce3bprovided by MGI
Official Full Name
late cornified envelope 3Bprovided by MGI
Primary source
MGI:MGI:1913594
See related
Ensembl:ENSMUSG00000042031 AllianceGenome:MGI:1913594
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sprrl6A; 2310007F04Rik
Summary
Orthologous to several human genes including LCE3B (late cornified envelope 3B) and LCE3C (late cornified envelope 3C). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in stomach adult (RPKM 66.9) and lung adult (RPKM 53.4) See more
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Genomic context

See Lce3b in Genome Data Viewer
Location:
3 F1; 3 40.14 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92840286..92841404)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92932979..92934096)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_08316 Neighboring gene KPRP N-terminal and LCE C-terminal like protein Neighboring gene late cornified envelope 3A Neighboring gene late cornified envelope 3C Neighboring gene predicted gene, 24481

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General protein information

Preferred Names
late cornified envelope protein 3C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025501.4NP_079777.1  late cornified envelope protein 3C

    See identical proteins and their annotated locations for NP_079777.1

    Status: VALIDATED

    Source sequence(s)
    AC132274
    Consensus CDS
    CCDS38520.1
    UniProtKB/TrEMBL
    Q9CQM7
    Related
    ENSMUSP00000046325.4, ENSMUST00000046234.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    92840286..92841404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)