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Pigbos1 Pigb opposite strand 1 [ Mus musculus (house mouse) ]

Gene ID: 66364, updated on 28-Oct-2024

Summary

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Official Symbol
Pigbos1provided by MGI
Official Full Name
Pigb opposite strand 1provided by MGI
Primary source
MGI:MGI:1913614
See related
Ensembl:ENSMUSG00000098332 AllianceGenome:MGI:1913614
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2310009A05Rik; 5031420N21Rik
Summary
Predicted to be involved in regulation of endoplasmic reticulum unfolded protein response. Predicted to be located in mitochondrial outer membrane. Orthologous to human PIGBOS1 (PIGB opposite strand 1). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Ubiquitous expression in kidney adult (RPKM 11.4), CNS E11.5 (RPKM 9.8) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Pigbos1 in Genome Data Viewer
Location:
9 D; 9 40.08 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (72947000..72950064)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (73039718..73042782)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3843 Neighboring gene piercer of microtubule wall 2 Neighboring gene STARR-seq mESC enhancer starr_24620 Neighboring gene cell cycle progression 1 Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class B Neighboring gene RAB27A, member RAS oncogene family Neighboring gene STARR-seq mESC enhancer starr_24625 Neighboring gene STARR-seq mESC enhancer starr_24627 Neighboring gene STARR-seq mESC enhancer starr_24629 Neighboring gene KH domain containing 3, subcortical maternal complex member

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  2. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in regulation of endoplasmic reticulum unfolded protein response ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in mitochondrial outer membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
protein PIGBOS1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001308425.1 → NP_001295354.1  protein PIGBOS1

    See identical proteins and their annotated locations for NP_001295354.1

    Status: VALIDATED

    Source sequence(s)
    AC158997, AK009244, BB027756
    Consensus CDS
    CCDS90621.1
    UniProtKB/TrEMBL
    A0A5F8MPY0
    Related
    ENSMUSP00000159173.2, ENSMUST00000184126.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    72947000..72950064
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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