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2310022A10Rik RIKEN cDNA 2310022A10 gene [ Mus musculus (house mouse) ]

Gene ID: 66367, updated on 2-Nov-2024

Summary

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Official Symbol
2310022A10Rikprovided by MGI
Official Full Name
RIKEN cDNA 2310022A10 geneprovided by MGI
Primary source
MGI:MGI:1913617
See related
Ensembl:ENSMUSG00000049643 AllianceGenome:MGI:1913617
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human C19orf47 (chromosome 19 open reading frame 47). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in heart adult (RPKM 19.9), thymus adult (RPKM 16.0) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See 2310022A10Rik in Genome Data Viewer
Location:
7 A3; 7 15.93 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (27252482..27281524)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (27553243..27582099)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4910 Neighboring gene predicted gene 15541 Neighboring gene periaxin Neighboring gene homeodomain interacting protein kinase 4 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28326448-28326635 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28330144-28330331 Neighboring gene phospholipase D family member 3 Neighboring gene predicted gene, 45975 Neighboring gene STARR-seq mESC enhancer starr_18371 Neighboring gene STARR-seq mESC enhancer starr_18372 Neighboring gene STARR-positive B cell enhancer ABC_E6525 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28376489-28376676 Neighboring gene STARR-positive B cell enhancer ABC_E11346 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28377425-28377608 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene thymoma viral proto-oncogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. VanBuren V, et al. Genome Res, 2002 Dec. PMID 12466305, Free PMC Article
  2. Transcription factor Foxp3 and its protein partners form a complex regulatory network. Rudra D, et al. Nat Immunol, 2012 Oct. PMID 22922362, Free PMC Article
  3. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  4. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein C19orf47 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001122767.1 → NP_001116239.1  uncharacterized protein C19orf47 homolog isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at a downstream in-frame ATG and result in an isoform (2) with a distinct C-terminus and shorter N-terminus when compared to isoform 1.
    Source sequence(s)
    AK077369, BQ560353, BU555303
    UniProtKB/TrEMBL
    A0A0R4J2B5
    Related
    ENSMUSP00000139423.2, ENSMUST00000187032.2
    Conserved Domains (1) summary
    cd09531
    Location:8 → 72
    SAM_CS047; SAM domain of CS047 subfamily

  2. NM_001374792.1 → NP_001361721.1  uncharacterized protein C19orf47 homolog isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC074312, AC158304
    Consensus CDS
    CCDS90190.1
    UniProtKB/TrEMBL
    A0A087WRI8, A0A0R4J2B5
    Related
    ENSMUSP00000140651.2, ENSMUST00000187960.7
    Conserved Domains (2) summary
    pfam17740
    Location:119 → 366
    DUF5577; Family of unknown function (DUF5577)
    pfam18017
    Location:27 → 110
    SAM_4; SAM domain (Sterile alpha motif)

  3. NM_175107.5 → NP_780316.3  uncharacterized protein C19orf47 homolog isoform 1

    See identical proteins and their annotated locations for NP_780316.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AK077369, BB853451, BE854222, BQ560353, BU555303, BX522780
    Consensus CDS
    CCDS21026.1
    UniProtKB/Swiss-Prot
    Q3US50, Q8BVL8, Q8C1M9, Q8R3Y5
    UniProtKB/TrEMBL
    G5E8E3
    Related
    ENSMUSP00000066803.8, ENSMUST00000067386.14
    Conserved Domains (1) summary
    cd09531
    Location:34 → 98
    SAM_CS047; SAM domain of CS047 subfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    27252482..27281524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036153351.1 → XP_036009244.1  uncharacterized protein C19orf47 homolog isoform X1

    UniProtKB/TrEMBL
    A0A087WRI8, A0A0R4J2B5
    Conserved Domains (2) summary
    pfam17740
    Location:119 → 366
    DUF5577; Family of unknown function (DUF5577)
    pfam18017
    Location:27 → 110
    SAM_4; SAM domain (Sterile alpha motif)

  2. XM_017312231.2 → XP_017167720.1  uncharacterized protein C19orf47 homolog isoform X2

    Conserved Domains (2) summary
    pfam17740
    Location:119 → 163
    DUF5577; Family of unknown function (DUF5577)
    pfam18017
    Location:27 → 110
    SAM_4; SAM domain (Sterile alpha motif)

RNA

  1. XR_391092.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8R3Y5.2 GenPept UniProtKB/Swiss-Prot:Q8R3Y5

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