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Ccdc82 coiled-coil domain containing 82 [ Mus musculus (house mouse) ]

Gene ID: 66396, updated on 2-Nov-2024

Summary

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Official Symbol
Ccdc82provided by MGI
Official Full Name
coiled-coil domain containing 82provided by MGI
Primary source
MGI:MGI:1913646
See related
Ensembl:ENSMUSG00000079084 AllianceGenome:MGI:1913646
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2310043N13Rik
Summary
Predicted to be active in nucleus. Orthologous to human CCDC82 (coiled-coil domain containing 82). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in bladder adult (RPKM 4.3), liver E14 (RPKM 2.9) and 24 other tissues See more
Orthologs
human all
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Genomic context

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See Ccdc82 in Genome Data Viewer
Location:
9; 9 A1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (13246573..13292867)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (13246917..13292517)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930568E12 gene Neighboring gene STARR-seq mESC enhancer starr_23331 Neighboring gene Jrk-like Neighboring gene predicted gene, 26189 Neighboring gene mastermind like transcriptional coactivator 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:13269708-13269915 Neighboring gene STARR-seq mESC enhancer starr_23332 Neighboring gene per-hexamer repeat gene 4 Neighboring gene STARR-seq mESC enhancer starr_23333 Neighboring gene STARR-seq mESC enhancer starr_23334 Neighboring gene STARR-seq mESC enhancer starr_23335 Neighboring gene predicted gene, 51666

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Clone Names

  • FLJ23518, MGC107477

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 82

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025534.4 → NP_079810.2  coiled-coil domain-containing protein 82

    See identical proteins and their annotated locations for NP_079810.2

    Status: VALIDATED

    Source sequence(s)
    MH423685, MH423686
    Consensus CDS
    CCDS57651.1
    UniProtKB/Swiss-Prot
    Q3V462, Q6PG04
    Related
    ENSMUSP00000106212.3, ENSMUST00000110583.12
    Conserved Domains (2) summary
    pfam13846
    Location:98 → 211
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:273 → 425
    DUF4211; Domain of unknown function (DUF4211)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    13246573..13292867
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017313513.2 → XP_017169002.1  coiled-coil domain-containing protein 82 isoform X1

    UniProtKB/Swiss-Prot
    Q3V462, Q6PG04
    Related
    ENSMUSP00000150947.2, ENSMUST00000217444.4
    Conserved Domains (2) summary
    pfam13846
    Location:98 → 211
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:273 → 425
    DUF4211; Domain of unknown function (DUF4211)

  2. XM_036155176.1 → XP_036011069.1  coiled-coil domain-containing protein 82 isoform X2

    Conserved Domains (1) summary
    pfam13846
    Location:98 → 211
    DUF4196; Domain of unknown function (DUF4196)

  3. XM_017313511.2 → XP_017169000.1  coiled-coil domain-containing protein 82 isoform X1

    UniProtKB/Swiss-Prot
    Q3V462, Q6PG04
    Conserved Domains (2) summary
    pfam13846
    Location:98 → 211
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:273 → 425
    DUF4211; Domain of unknown function (DUF4211)

  4. XM_017313512.3 → XP_017169001.1  coiled-coil domain-containing protein 82 isoform X1

    UniProtKB/Swiss-Prot
    Q3V462, Q6PG04
    Conserved Domains (2) summary
    pfam13846
    Location:98 → 211
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:273 → 425
    DUF4211; Domain of unknown function (DUF4211)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6PG04.1 GenPept UniProtKB/Swiss-Prot:Q6PG04

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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