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Zpld2 zona pellucida like domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 665186, updated on 28-Oct-2024

Summary

Official Symbol
Zpld2provided by MGI
Official Full Name
zona pellucida like domain containing 2provided by MGI
Primary source
MGI:MGI:3702974
See related
Ensembl:ENSMUSG00000073747 AllianceGenome:MGI:3702974
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm7534; EG665186
Summary
Predicted to be involved in neutrophil migration. Predicted to be active in apical plasma membrane; cell surface; and extracellular space. Orthologous to human ZPLD2P (zona pellucida like domain containing 2, pseudogene). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

See Zpld2 in Genome Data Viewer
Location:
4 D2.3; 4 66.5 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (133918115..133930315, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (134190804..134203004, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene SH3 domain binding glutamic acid-rich protein-like 3 Neighboring gene centrosomal protein 85 Neighboring gene STARR-positive B cell enhancer mm9_chr4:133715471-133715771 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:133742713-133742822 Neighboring gene STARR-positive B cell enhancer ABC_E843 Neighboring gene cation channel, sperm associated 4 Neighboring gene connector enhancer of kinase suppressor of Ras 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in neutrophil migration IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in apical plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in cell surface IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080712.1NP_001074181.1  uromodulin-like

    See identical proteins and their annotated locations for NP_001074181.1

    Status: PROVISIONAL

    Source sequence(s)
    AK138880
    Consensus CDS
    CCDS38911.1
    UniProtKB/TrEMBL
    Q3UU21
    Related
    ENSMUSP00000095461.3, ENSMUST00000097849.3
    Conserved Domains (2) summary
    smart00241
    Location:368616
    ZP; Zona pellucida (ZP) domain
    pfam00100
    Location:497616
    Zona_pellucida; Zona pellucida-like domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    133918115..133930315 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)