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Aggf1 angiogenic factor with G patch and FHA domains 1 [ Mus musculus (house mouse) ]

Gene ID: 66549, updated on 2-Nov-2024

Summary

Official Symbol
Aggf1provided by MGI
Official Full Name
angiogenic factor with G patch and FHA domains 1provided by MGI
Primary source
MGI:MGI:1913799
See related
Ensembl:ENSMUSG00000021681 AllianceGenome:MGI:1913799
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Peg3; VG5Q; 2010009L17Rik; 2310029P06Rik
Summary
Predicted to enable nucleic acid binding activity. Predicted to be involved in cell adhesion; positive regulation of angiogenesis; and positive regulation of endothelial cell proliferation. Predicted to be located in extracellular region and perinuclear region of cytoplasm. Is expressed in several structures, including central nervous system; egg cylinder; genitourinary system; primitive streak; and sensory organ. Orthologous to human AGGF1 (angiogenic factor with G-patch and FHA domains 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in adrenal adult (RPKM 16.3), CNS E11.5 (RPKM 15.1) and 28 other tissues See more
Orthologs
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Genomic context

See Aggf1 in Genome Data Viewer
Location:
13 D1; 13 49.41 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (95487191..95511865, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (95350683..95375357, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene zinc finger, BED type containing 3 Neighboring gene predicted gene, 22661 Neighboring gene STARR-positive B cell enhancer mm9_chr13:96117046-96117346 Neighboring gene predicted gene, 53806 Neighboring gene STARR-positive B cell enhancer ABC_E7266 Neighboring gene STARR-seq mESC enhancer starr_35322 Neighboring gene STARR-positive B cell enhancer ABC_E3093 Neighboring gene STARR-seq mESC enhancer starr_35323 Neighboring gene corticotropin releasing hormone binding protein Neighboring gene predicted gene, 52025 Neighboring gene S100 calcium binding protein, zeta

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (4) 
  • Gene trapped (2) 
  • Targeted (1)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in cell adhesion ISO
Inferred from Sequence Orthology
more info
 
involved_in cell adhesion ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of angiogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of angiogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of angiogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of endothelial cell proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of endothelial cell proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in extracellular region ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular region ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in perinuclear region of cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
angiogenic factor with G patch and FHA domains 1
Names
angiogenic factor VG5Q

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025630.3NP_079906.2  angiogenic factor with G patch and FHA domains 1

    See identical proteins and their annotated locations for NP_079906.2

    Status: VALIDATED

    Source sequence(s)
    AA138180, AK132575, BC052410
    Consensus CDS
    CCDS26697.1
    UniProtKB/Swiss-Prot
    Q7TN31, Q8R2S6, Q9CQR9, Q9CU87, Q9D768
    UniProtKB/TrEMBL
    Q3V1B3
    Related
    ENSMUSP00000022189.9, ENSMUST00000022189.9
    Conserved Domains (4) summary
    COG1716
    Location:424509
    FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]
    cd00060
    Location:407513
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    pfam01585
    Location:617658
    G-patch; G-patch domain
    cd16164
    Location:200253
    OCRE_VG5Q; OCRE domain found in angiogenic factor VG5Q and similar proteins

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    95487191..95511865 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)