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4930544D05Rik RIKEN cDNA 4930544D05 gene [ Mus musculus (house mouse) ]

Gene ID: 668433, updated on 2-Nov-2024

Summary

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Official Symbol
4930544D05Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930544D05 geneprovided by MGI
Primary source
MGI:MGI:2148639
See related
Ensembl:ENSMUSG00000087279 AllianceGenome:MGI:2148639
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C17orf107 (chromosome 17 open reading frame 107). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 201.1) See more
Orthologs
human all
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Genomic context

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See 4930544D05Rik in Genome Data Viewer
Location:
11 B3; 11 43.14 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (70506600..70507718)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (70615589..70616892)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene phospholipase D2 Neighboring gene misshapen-like kinase 1 (zebrafish) Neighboring gene STARR-seq mESC enhancer starr_29877 Neighboring gene predicted gene, 51905 Neighboring gene cholinergic receptor, nicotinic, epsilon polypeptide Neighboring gene predicted gene 12315 Neighboring gene glycoprotein 1b, alpha polypeptide

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C17orf107 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145537.1 → NP_001139009.1  uncharacterized protein C17orf107 homolog

    Status: VALIDATED

    Source sequence(s)
    AL592547
    Consensus CDS
    CCDS56785.1
    UniProtKB/TrEMBL
    J3QJW4
    Related
    ENSMUSP00000136077.2, ENSMUST00000144960.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    70506600..70507718
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006533966.5 → XP_006534029.1  uncharacterized protein C17orf107 homolog isoform X1

    See identical proteins and their annotated locations for XP_006534029.1

    UniProtKB/TrEMBL
    J3QK56
    Related
    ENSMUSP00000137259.2, ENSMUST00000180052.8
    Conserved Domains (1) summary
    pfam17688
    Location:1 → 186
    DUF5536; Family of unknown function (DUF5536)
Nucleotide Protein Strain
Heading Accession and Version

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