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Gm9222 predicted gene 9222 [ Mus musculus (house mouse) ]

Gene ID: 668525, updated on 28-Oct-2024

Summary

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Official Symbol
Gm9222provided by MGI
Official Full Name
predicted gene 9222provided by MGI
Primary source
MGI:MGI:3647701
See related
Ensembl:ENSMUSG00000121309 AllianceGenome:MGI:3647701
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BDR-1; Gm29722; EG668383; EG668525
Summary
Is expressed in brain and telencephalon. [provided by Alliance of Genome Resources, Oct 2024]
Expression
Ubiquitous expression in adrenal adult (RPKM 3.4), ovary adult (RPKM 3.2) and 27 other tissues See more
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Genomic context

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See Gm9222 in Genome Data Viewer
Location:
12 A1.2; 12 8.14 cM
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (17931553..18236175)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (17881552..17939655)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene hippocalcin-like 1 Neighboring gene STARR-seq mESC enhancer starr_31667 Neighboring gene predicted gene, 51995 Neighboring gene STARR-seq mESC enhancer starr_31670 Neighboring gene predicted gene, 40312 Neighboring gene STARR-seq mESC enhancer starr_31671 Neighboring gene predicted gene, 51520 Neighboring gene STARR-seq mESC enhancer starr_31672 Neighboring gene predicted gene 4983 Neighboring gene predicted gene, 49328 Neighboring gene STARR-seq mESC enhancer starr_31673 Neighboring gene predicted gene, 40850 Neighboring gene STARR-seq mESC enhancer starr_31675 Neighboring gene hippocalcin-like protein 1 Neighboring gene hippocalcin-like protein 1 Neighboring gene BCL2/adenovirus E1B interacting protein 3-like, pseudogene Neighboring gene predicted gene, 40879

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A genetic analysis of neural progenitor differentiation. Geschwind DH, et al. Neuron, 2001 Feb. PMID 11239426
  2. Neural progenitor genes. Germinal zone expression and analysis of genetic overlap in stem cell populations. Easterday MC, et al. Dev Biol, 2003 Dec 15. PMID 14651920
  3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  4. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC668525

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001382838.1 → NP_001369767.1  uncharacterized protein LOC668525 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AC154636
    Related
    ENSMUST00000310214.1
    Conserved Domains (4) summary
    COG5048
    Location:98 → 408
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:370 → 390
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:45 → 85
    KRAB; KRAB box
    pfam13465
    Location:414 → 435
    zf-H2C2_2; Zinc-finger double domain

  2. NM_001382839.1 → NP_001369768.1  uncharacterized protein LOC668525 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC154636, CT030170
    Conserved Domains (1) summary
    pfam01352
    Location:45 → 85
    KRAB; KRAB box

  3. NM_001382840.1 → NP_001369769.1  uncharacterized protein LOC668525 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC154636
    Conserved Domains (1) summary
    pfam01352
    Location:45 → 85
    KRAB; KRAB box

  4. NM_001382841.1 → NP_001369770.1  uncharacterized protein LOC668525 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC154636, CT030170

  5. NM_001382842.1 → NP_001369771.1  uncharacterized protein LOC668525 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC154636
    Related
    ENSMUST00000310215.1

  6. NM_001382843.1 → NP_001369772.1  uncharacterized protein LOC668525 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC154636, CT030170

RNA

  1. NR_168599.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC154636

  2. NR_168600.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC154636, CT030170

  3. NR_168601.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC154636, CT030170
    Related
    ENSMUST00000310202.1

  4. NR_168602.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC154636, CT030170
    Related
    ENSMUST00000310200.1

  5. NR_168603.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC154636, CT030170
    Related
    ENSMUST00000310201.1

  6. NR_168604.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC154636, CT030170

  7. NR_168605.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC154636, CT030170
    Related
    ENSMUST00000310203.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    17931553..18236175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036157582.1 → XP_036013475.1  uncharacterized protein LOC668525 isoform X1

    Conserved Domains (1) summary
    pfam01352
    Location:45 → 85
    KRAB; KRAB box

  2. XM_036157583.1 → XP_036013476.1  uncharacterized protein LOC668525 isoform X2

  3. XM_036157584.1 → XP_036013477.1  uncharacterized protein LOC668525 isoform X3

  4. XM_036157586.1 → XP_036013479.1  uncharacterized protein LOC668525 isoform X5

  5. XM_036157585.1 → XP_036013478.1  uncharacterized protein LOC668525 isoform X4

Nucleotide Protein Strain
Heading Accession and Version

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