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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001039951.2 → NP_001035040.1 zinc finger protein 606 isoform 2
See identical proteins and their annotated locations for NP_001035040.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region and lacks several coding exons, compared to variant 1. This results in a shorter isoform (2) with a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AK032301, AK165095, BY278345
- Consensus CDS
-
CCDS85215.1
- UniProtKB/TrEMBL
-
Q2TAX9
- Related
- ENSMUSP00000147558.2, ENSMUST00000123589.8
-
NM_001310620.1 → NP_001297549.1 zinc finger protein 606 isoform 3
See identical proteins and their annotated locations for NP_001297549.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) contains an alternate 5' exon. This variant represents translation initiation at an alternate AUG compared to variant 1; the 5'-most initiation codon, as used in variant 1, is associated with a truncated ORF that would render the transcript a candidate for nonsense-mediated decay (NMD). Leaky scanning may allow translation initiation at the downstream AUG to encode an isoform (3) that has a shorter and distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AC139131, AK139269, AK143200
- Consensus CDS
-
CCDS80663.1
- UniProtKB/TrEMBL
-
Q69Z88
- Conserved Domains (5) summary
-
- smart00349
Location:5 → 65
- KRAB; krueppel associated box
- COG5048
Location:328 → 734
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:403 → 423
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam01352
Location:5 → 44
- KRAB; KRAB box
- pfam13465
Location:583 → 608
- zf-H2C2_2; Zinc-finger double domain
-
NM_026112.4 → NP_080388.2 zinc finger protein 606 isoform 1
See identical proteins and their annotated locations for NP_080388.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AK139269, AK143200
- Consensus CDS
-
CCDS20810.1
- UniProtKB/TrEMBL
-
Q7TSV0
- Related
- ENSMUSP00000096421.4, ENSMUST00000098822.10
- Conserved Domains (6) summary
-
- smart00349
Location:63 → 123
- KRAB; krueppel associated box
- COG5048
Location:386 → 792
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:461 → 481
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:739 → 761
- zf-C2H2; Zinc finger, C2H2 type
- pfam01352
Location:63 → 102
- KRAB; KRAB box
- pfam13465
Location:641 → 666
- zf-H2C2_2; Zinc-finger double domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000073.7 Reference GRCm39 C57BL/6J
- Range
-
12212208..12230162
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006540320.4 → XP_006540383.1 zinc finger protein 606 isoform X1
- Conserved Domains (3) summary
-
- smart00349
Location:24 → 84
- KRAB; krueppel associated box
- COG5048
Location:347 → 753
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:422 → 442
- ZF_C2H2; C2H2 Zn finger [structural motif]
RNA
-
XR_881784.4 RNA Sequence