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4833420G17Rik RIKEN cDNA 4833420G17 gene [ Mus musculus (house mouse) ]

Gene ID: 67392, updated on 2-Nov-2024

Summary

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Official Symbol
4833420G17Rikprovided by MGI
Official Full Name
RIKEN cDNA 4833420G17 geneprovided by MGI
Primary source
MGI:MGI:1914642
See related
Ensembl:ENSMUSG00000062822 AllianceGenome:MGI:1914642
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2210017J06Rik; 5730533D17Rik
Summary
Is expressed in embryo and medial ganglionic eminence. Orthologous to human C5orf34 (chromosome 5 open reading frame 34). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in CNS E14 (RPKM 19.2), whole brain E14.5 (RPKM 16.3) and 25 other tissues See more
Orthologs
human all
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Genomic context

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See 4833420G17Rik in Genome Data Viewer
Location:
13 D2.3; 13 67.24 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (119599295..119622656)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (119462015..119486120)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:120196902-120197103 Neighboring gene nicotinamide nucleotide transhydrogenase Neighboring gene STARR-positive B cell enhancer ABC_E7292 Neighboring gene RIKEN cDNA 3110070M22 gene Neighboring gene STARR-seq mESC enhancer starr_35805 Neighboring gene polyadenylate binding protein-interacting protein 1 Neighboring gene predicted gene 9752 Neighboring gene transmembrane protein 267 Neighboring gene C-C motif chemokine ligand 28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain. Cajigas I, et al. Mol Cell, 2018 Sep 20. PMID 30146317, Free PMC Article
  2. The sperm-associated antigen 6 interactome and its role in spermatogenesis. Liu Y, et al. Reproduction, 2019 Aug. PMID 31146259, Free PMC Article
  3. Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives. Tamplin OJ, et al. BMC Genomics, 2008 Oct 30. PMID 18973680, Free PMC Article
  4. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  5. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C5orf34 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113550.1 → NP_001107022.1  uncharacterized protein C5orf34 homolog

    See identical proteins and their annotated locations for NP_001107022.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate internal 5' UTR segment, as compared to variant 1.
    Source sequence(s)
    AK008565, AK146515
    Consensus CDS
    CCDS49373.1
    UniProtKB/Swiss-Prot
    Q3TUB6, Q3UF19, Q3UJC8, Q78HE1, Q8K3D5, Q9CUS5, Q9D822
    Related
    ENSMUSP00000026519.9, ENSMUST00000026519.10
    Conserved Domains (2) summary
    pfam15016
    Location:455 → 541
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:9 → 153
    DUF4524; Domain of unknown function (DUF4524)

  2. NM_001360805.1 → NP_001347734.1  uncharacterized protein C5orf34 homolog

    Status: VALIDATED

    Source sequence(s)
    AC163689
    Consensus CDS
    CCDS49373.1
    UniProtKB/Swiss-Prot
    Q3TUB6, Q3UF19, Q3UJC8, Q78HE1, Q8K3D5, Q9CUS5, Q9D822
    Conserved Domains (2) summary
    pfam15016
    Location:455 → 541
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:9 → 153
    DUF4524; Domain of unknown function (DUF4524)

  3. NM_026127.4 → NP_080403.4  uncharacterized protein C5orf34 homolog

    See identical proteins and their annotated locations for NP_080403.4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK008565, AK146515, BC030738, CK389219
    Consensus CDS
    CCDS49373.1
    UniProtKB/Swiss-Prot
    Q3TUB6, Q3UF19, Q3UJC8, Q78HE1, Q8K3D5, Q9CUS5, Q9D822
    Related
    ENSMUSP00000153079.2, ENSMUST00000225186.2
    Conserved Domains (2) summary
    pfam15016
    Location:455 → 541
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:9 → 153
    DUF4524; Domain of unknown function (DUF4524)

RNA

  1. NR_153825.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163689
    Related
    ENSMUST00000225726.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    119599295..119622656
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006517747.2 → XP_006517810.1  uncharacterized protein C5orf34 homolog isoform X1

    See identical proteins and their annotated locations for XP_006517810.1

    UniProtKB/Swiss-Prot
    Q3TUB6, Q3UF19, Q3UJC8, Q78HE1, Q8K3D5, Q9CUS5, Q9D822
    Related
    ENSMUSP00000153150.2, ENSMUST00000224312.2
    Conserved Domains (2) summary
    pfam15016
    Location:455 → 541
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:9 → 153
    DUF4524; Domain of unknown function (DUF4524)

  2. XM_006517744.2 → XP_006517807.1  uncharacterized protein C5orf34 homolog isoform X1

    See identical proteins and their annotated locations for XP_006517807.1

    UniProtKB/Swiss-Prot
    Q3TUB6, Q3UF19, Q3UJC8, Q78HE1, Q8K3D5, Q9CUS5, Q9D822
    Conserved Domains (2) summary
    pfam15016
    Location:455 → 541
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:9 → 153
    DUF4524; Domain of unknown function (DUF4524)

  3. XM_006517748.2 → XP_006517811.1  uncharacterized protein C5orf34 homolog isoform X1

    See identical proteins and their annotated locations for XP_006517811.1

    UniProtKB/Swiss-Prot
    Q3TUB6, Q3UF19, Q3UJC8, Q78HE1, Q8K3D5, Q9CUS5, Q9D822
    Conserved Domains (2) summary
    pfam15016
    Location:455 → 541
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:9 → 153
    DUF4524; Domain of unknown function (DUF4524)

  4. XM_006517743.2 → XP_006517806.1  uncharacterized protein C5orf34 homolog isoform X1

    See identical proteins and their annotated locations for XP_006517806.1

    UniProtKB/Swiss-Prot
    Q3TUB6, Q3UF19, Q3UJC8, Q78HE1, Q8K3D5, Q9CUS5, Q9D822
    Conserved Domains (2) summary
    pfam15016
    Location:455 → 541
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:9 → 153
    DUF4524; Domain of unknown function (DUF4524)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3UJC8.1 GenPept UniProtKB/Swiss-Prot:Q3UJC8

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