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FAM138D family with sequence similarity 138 member D [ Homo sapiens (human) ]

Gene ID: 677784, updated on 17-Sep-2024

Summary

Official Symbol
FAM138Dprovided by HGNC
Official Full Name
family with sequence similarity 138 member Dprovided by HGNC
Primary source
HGNC:HGNC:33583
See related
Ensembl:ENSG00000249054 AllianceGenome:HGNC:33583
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
F379
Expression
Low expression observed in reference dataset See more
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Genomic context

See FAM138D in Genome Data Viewer
Location:
12p13.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (36661..38133, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (30786..32250, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (67607..69079)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:86703-87203 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:81477-82356 Neighboring gene DEAD/H-box helicase 11 like 8 (pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:78811-79310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:78309-78810 Neighboring gene WAS protein family homolog 8, pseudogene Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr12:73943-74609 Neighboring gene uncharacterized LOC107987170 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr12:66685-67402 Neighboring gene IQ motif and Sec7 domain ArfGEF 3 Neighboring gene IQSEC3 antisense RNA 2 Neighboring gene uncharacterized LOC574538 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:254331-254832 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:254833-255332

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026823.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC215219
    Related
    ENST00000504074.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    36661..38133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003571049.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    26667..28135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    30786..32250 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)