Tmem178b transmembrane protein 178B [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Tmem178bprovided by RGD
Official Full Name: transmembrane protein 178Bprovided by RGD
Primary source: RGD:1585938
See related: EnsemblRapid:ENSRNOG00000047635 AllianceGenome:RGD:1585938
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be located in membrane. Orthologous to human TMEM178B (transmembrane protein 178B). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Brain (RPKM 109.1), Adrenal (RPKM 33.8) and 2 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 4q23

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	4	NC_086022.1 (69626188..70002400)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	4	NC_051339.1 (68659425..69035690)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	4	NC_005103.4 (67669266..68059249)

Chromosome 4 - NC_086022.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

G46264 (e-PCR)
- UniSTS:107066

BB283466 (e-PCR)
- UniSTS:207943

D7S2119E (e-PCR)
- UniSTS:151126

RH144079 (e-PCR)
- UniSTS:233325

BF397979 (e-PCR)
- UniSTS:246401

BF387142 (e-PCR)
- UniSTS:244218

Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transmembrane protein 178B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.