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Tma7 translation machinery associated 7 homolog [ Rattus norvegicus (Norway rat) ]

Gene ID: 679747, updated on 10-Jul-2024

Summary

Official Symbol
Tma7provided by RGD
Official Full Name
translation machinery associated 7 homologprovided by RGD
Primary source
RGD:1584795
See related
EnsemblRapid:ENSRNOG00000047225 AllianceGenome:RGD:1584795
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ccdc72
Summary
Predicted to be involved in cytoplasmic translation. Orthologous to human TMA7 (translation machinery associated 7 homolog). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 594.5), Adrenal (RPKM 546.2) and 9 other tissues See more
Orthologs
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Genomic context

See Tma7 in Genome Data Viewer
Location:
8q32
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (118604680..118609368, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (109726213..109730902, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (117815725..117820422, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene ATR interacting protein Neighboring gene U2 spliceosomal RNA Neighboring gene coiled-coil domain containing 51 Neighboring gene plexin B1 Neighboring gene cytochrome c oxidase subunit 6C, pseudogene 2 Neighboring gene F-box and WD repeat domain containing 12

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
translation machinery-associated protein 7
Names
coiled-coil domain containing 72
coiled-coil domain-containing protein 72
translational machinery associated 7 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126048.2NP_001119520.1  translation machinery-associated protein 7

    See identical proteins and their annotated locations for NP_001119520.1

    Status: VALIDATED

    Source sequence(s)
    BC157813, JAXUCZ010000008
    UniProtKB/TrEMBL
    A6I3B4
    Related
    ENSRNOP00000065251.4, ENSRNOT00000075819.4
    Conserved Domains (1) summary
    pfam09072
    Location:364
    TMA7; Translation machinery associated TMA7

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    118604680..118609368 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)