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Trappc6a trafficking protein particle complex subunit 6A [ Rattus norvegicus (Norway rat) ]

Gene ID: 680465, updated on 2-Nov-2024

Summary

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Official Symbol
Trappc6aprovided by RGD
Official Full Name
trafficking protein particle complex subunit 6Aprovided by RGD
Primary source
RGD:1591735
See related
EnsemblRapid:ENSRNOG00000017468 AllianceGenome:RGD:1591735
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309160
Summary
Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be part of TRAPP complex. Predicted to be active in cis-Golgi network and trans-Golgi network. Orthologous to human TRAPPC6A (trafficking protein particle complex subunit 6A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 264.0), Adrenal (RPKM 170.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Trappc6a in Genome Data Viewer
Location:
1q21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (88286533..88293493)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (79158587..79165502)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (80417514..80424429)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 3-like 2 Neighboring gene biogenesis of lysosomal organelles complex-1, subunit 3 Neighboring gene NTPase, KAP family P-loop domain containing 1 Neighboring gene protein phosphatase 1, regulatory subunit 37

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Identification of an additional member of the protein-tyrosine-phosphatase family: evidence for alternative splicing in the tyrosine phosphatase domain. Matthews RJ, et al. Proc Natl Acad Sci U S A, 1990 Jun. PMID 2162042, Free PMC Article
  2. A mouse TRAPP-related protein is involved in pigmentation. Gwynn B, et al. Genomics, 2006 Aug. PMID 16697553
  3. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of TRAPP complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cis-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
trafficking protein particle complex subunit 6A
Names
trafficking protein particle complex 6A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109410.1 → NP_001102880.1  trafficking protein particle complex subunit 6A

    See identical proteins and their annotated locations for NP_001102880.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473979
    UniProtKB/TrEMBL
    A6J8P0, A6J8P1
    Related
    ENSRNOP00000107960.1, ENSRNOT00000148438.1
    Conserved Domains (1) summary
    cd14944
    Location:3 → 157
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    88286533..88293493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063273658.1 → XP_063129728.1  trafficking protein particle complex subunit 6A isoform X1

  2. XM_063273662.1 → XP_063129732.1  trafficking protein particle complex subunit 6A isoform X2

    UniProtKB/TrEMBL
    D4A3S0
    Related
    ENSRNOP00000023652.7, ENSRNOT00000023652.8

  3. XM_063273664.1 → XP_063129734.1  trafficking protein particle complex subunit 6A isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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