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Skida1 SKI/DACH domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 680770, updated on 2-Nov-2024

Summary

Official Symbol
Skida1provided by RGD
Official Full Name
SKI/DACH domain containing 1provided by RGD
Primary source
RGD:1588196
See related
EnsemblRapid:ENSRNOG00000033330 AllianceGenome:RGD:1588196
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human SKIDA1 (SKI/DACH domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 32.8), Heart (RPKM 21.4) and 9 other tissues See more
Orthologs
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Genomic context

See Skida1 in Genome Data Viewer
Location:
17q12.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (85706693..85717499, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (80798241..80809062, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (84827089..84834838, complement)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene actin, beta, pseudogene 3 Neighboring gene uncharacterized LOC102553115 Neighboring gene uncharacterized LOC108353137 Neighboring gene MLLT10, histone lysine methyltransferase DOT1L cofactor Neighboring gene DnaJ heat shock protein family (Hsp40) member C1 Neighboring gene uncharacterized LOC108348596

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
SKI/DACH domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001400778.1NP_001387707.1  SKI/DACH domain-containing protein 1

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000017
    Related
    ENSRNOP00000110702.1, ENSRNOT00000134428.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    85706693..85717499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039096192.2XP_038952120.1  SKI/DACH domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    F1LXY5
    Related
    ENSRNOP00000110467.1, ENSRNOT00000154352.1
    Conserved Domains (2) summary
    pfam15223
    Location:470817
    DUF4584; Domain of unknown function (DUF4584)
    cd21082
    Location:696
    DHD_SKIDA1; Dachshund-homology domain found in SKI/DACH domain-containing protein 1 (SKIDA1) and similar proteins