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Bend4 BEN domain containing 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 681008, updated on 2-Nov-2024

Summary

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Symbol
Bend4provided by RGD
Full Name
BEN domain containing 4provided by RGD
Primary source
RGD:1584735
See related
EnsemblRapid:ENSRNOG00000053303 AllianceGenome:RGD:1584735
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable DNA binding activity. Orthologous to human BEND4 (BEN domain containing 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 43.6), Brain (RPKM 26.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Bend4 in Genome Data Viewer
Location:
14p11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (41106206..41142572)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (40753048..40788686)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (42399359..42401643) , (42401665..42437957)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102547499 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene uncharacterized LOC108352745 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene solute carrier family 30 member 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
BEN domain containing 4; BEN domain-containing protein 4
Names
BEN domain-containing protein 4-like
serine/arginine repetitive matrix protein 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    41106206..41142572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063273822.1 → XP_063129892.1  BEN domain-containing protein 4 isoform X3

  2. XM_006250982.5 → XP_006251044.4  BEN domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K5Z6
    Related
    ENSRNOP00000073618.2, ENSRNOT00000090148.3
    Conserved Domains (2) summary
    smart00338
    Location:335 → 372
    BRLZ; basic region leucin zipper
    pfam10523
    Location:423 → 497
    BEN; BEN domain

  3. XM_039092733.2 → XP_038948661.1  BEN domain-containing protein 4 isoform X2

    Conserved Domains (1) summary
    smart00338
    Location:335 → 372
    BRLZ; basic region leucin zipper
Nucleotide Protein Strain
Heading Accession and Version

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