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B230217C12Rik RIKEN cDNA B230217C12 gene [ Mus musculus (house mouse) ]

Gene ID: 68127, updated on 17-Aug-2024

Summary

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Official Symbol
B230217C12Rikprovided by MGI
Official Full Name
RIKEN cDNA B230217C12 geneprovided by MGI
Primary source
MGI:MGI:1915377
See related
AllianceGenome:MGI:1915377
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in cortex adult (RPKM 28.5), cerebellum adult (RPKM 28.0) and 11 other tissues See more
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Genomic context

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See B230217C12Rik in Genome Data Viewer
Location:
11 D; 11 61.11 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (97731961..97734263)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (97841135..97843437)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7052 Neighboring gene nuclear encoded tRNA cysteine 56 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 51 (anticodon GCA) Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:97669517-97669700 Neighboring gene LIM and SH3 protein 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:97686746-97686855 Neighboring gene STARR-seq mESC enhancer starr_30642 Neighboring gene STARR-seq mESC enhancer starr_30643 Neighboring gene F-box protein 47 Neighboring gene STARR-positive B cell enhancer ABC_E3011 Neighboring gene STARR-seq mESC enhancer starr_30644 Neighboring gene STARR-seq mESC enhancer starr_30646 Neighboring gene plexin domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_30648 Neighboring gene predicted gene 11633

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160859.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL596446

  2. NR_160860.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL596446

  3. NR_160861.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL596446

  4. NR_160862.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL596446

  5. NR_160863.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL596446

  6. NR_169086.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL596446

  7. NR_169087.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL596446

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    97731961..97734263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001080935.1: Suppressed sequence

    Description
    NM_001080935.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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