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Tmem41a transmembrane protein 41a [ Rattus norvegicus (Norway rat) ]

Gene ID: 681708, updated on 2-Nov-2024

Summary

Official Symbol
Tmem41aprovided by RGD
Official Full Name
transmembrane protein 41aprovided by RGD
Primary source
RGD:1591692
See related
EnsemblRapid:ENSRNOG00000046283 AllianceGenome:RGD:1591692
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in membrane. Orthologous to human TMEM41A (transmembrane protein 41A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Heart (RPKM 89.7), Brain (RPKM 75.3) and 9 other tissues See more
Orthologs
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Genomic context

See Tmem41a in Genome Data Viewer
Location:
11q23
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (92588497..92595105)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (79084005..79090613)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (82734525..82741177)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene SUMO specific peptidase 2 Neighboring gene lipase H Neighboring gene mitogen-activated protein kinase kinase kinase 13 Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100805.1NP_001094275.1  transmembrane protein 41A

    See identical proteins and their annotated locations for NP_001094275.1

    Status: PROVISIONAL

    Source sequence(s)
    BC161997
    UniProtKB/TrEMBL
    A0A8I5Y0U1, A0A9K3Y6N6, B1WC43, M0R9Y7
    Related
    ENSRNOP00000066322.3, ENSRNOT00000074826.4
    Conserved Domains (1) summary
    pfam09335
    Location:85205
    SNARE_assoc; SNARE associated Golgi protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    92588497..92595105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)