U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Krtcap3 keratinocyte associated protein 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 683980, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Krtcap3provided by RGD
Official Full Name
keratinocyte associated protein 3provided by RGD
Primary source
RGD:1596516
See related
EnsemblRapid:ENSRNOG00000047941 AllianceGenome:RGD:1596516
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in membrane. Orthologous to human KRTCAP3 (keratinocyte associated protein 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 54.6), Kidney (RPKM 44.5) and 7 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Krtcap3 in Genome Data Viewer
Location:
6q14
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (30840906..30842500, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (25120938..25122522, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (26485126..26486695, complement)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene glucokinase regulator Neighboring gene fibronectin type III domain containing 4 Neighboring gene intraflagellar transport 172 Neighboring gene nuclear receptor binding protein 1 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1G

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
keratinocyte-associated protein 3
Names
KCP-3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109674.1 → NP_001103144.1  keratinocyte-associated protein 3

    See identical proteins and their annotated locations for NP_001103144.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473947
    UniProtKB/Swiss-Prot
    Q497B3
    UniProtKB/TrEMBL
    A0A8I5ZZ03, A6HA63
    Related
    ENSRNOP00000063910.1, ENSRNOT00000073236.3
    Conserved Domains (1) summary
    pfam12304
    Location:19 → 205
    BCLP; Beta-casein like protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    30840906..30842500 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039112927.2 → XP_038968855.1  keratinocyte-associated protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZX93, A0A8I5ZZ03
    Related
    ENSRNOP00000082458.1, ENSRNOT00000117566.2
    Conserved Domains (1) summary
    pfam12304
    Location:19 → 185
    BCLP; Beta-casein like protein
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q497B3.1 GenPept UniProtKB/Swiss-Prot:Q497B3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools