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H2ac23 H2A clustered histone 23 [ Rattus norvegicus (Norway rat) ]

Gene ID: 684773, updated on 2-Nov-2024

Summary

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Official Symbol
H2ac23provided by RGD
Official Full Name
H2A clustered histone 23provided by RGD
Primary source
RGD:1586722
See related
AllianceGenome:RGD:1586722
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
H2ac13
Summary
Predicted to enable protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Orthologous to human H2AC4 (H2A clustered histone 4) and H2AC8 (H2A clustered histone 8). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See H2ac23 in Genome Data Viewer
Location:
17p11
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (41960723..41961309, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (41532685..41533271, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (43777353..43777827, complement)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene H2B clustered histone 6 Neighboring gene H3 clustered histone 13 Neighboring gene histone cluster 1, H2an Neighboring gene H2B clustered histone like 2 Neighboring gene uncharacterized LOC120097727

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
similar to histone 2a
Names
H2A clustered histone 13
histone H2A type 1
histone H2A type 1-B
histone H2A type 1-H

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001408932.1 → NP_001395861.1  similar to histone 2a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000017
    UniProtKB/TrEMBL
    A6KLN9, G3V9C0

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    41960723..41961309 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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