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Speer4cl8 spermatogenesis associated glutamate (E)-rich protein 4C like 8 [ Rattus norvegicus (Norway rat) ]

Gene ID: 685125, updated on 17-Aug-2024

Summary

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Official Symbol
Speer4cl8provided by RGD
Official Full Name
spermatogenesis associated glutamate (E)-rich protein 4C like 8provided by RGD
Primary source
RGD:1597757
See related
AllianceGenome:RGD:1597757
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Speer4cl2
Expression
Biased expression in Testes (RPKM 32.0), Brain (RPKM 14.0) and 4 other tissues See more
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Genomic context

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See Speer4cl8 in Genome Data Viewer
Location:
19q11
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (39405917..39410582)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (22852199..22922593)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (27639104..27646521)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH-type containing, antiviral 1, pseudogene 3 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4C like 7 Neighboring gene uncharacterized LOC134483315 Neighboring gene DNA-directed RNA polymerase II subunit GRINL1A-like Neighboring gene serine/threonine-protein phosphatase PP1-beta catalytic subunit pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Other Names

  • disks large homolog 5-like
  • spermatogenesis associated glutamate (E)-rich protein 4C like 2
  • spermatogenesis associated glutamate (E)-rich protein 4b-like

General protein information

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Preferred Names
disks large homolog 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_197252.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000019

  2. NR_197253.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000019

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    39405917..39410582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063278607.1 → XP_063134677.1  disks large homolog 5-like

RNA

  1. XR_010060137.1 RNA Sequence

  2. XR_005496923.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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