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Cfap299 cilia and flagella associated protein 299 [ Rattus norvegicus (Norway rat) ]

Gene ID: 685158, updated on 10-Oct-2024

Summary

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Symbol
Cfap299provided by RGD
Full Name
cilia and flagella associated protein 299provided by RGD
Primary source
RGD:1597725
See related
EnsemblRapid:ENSRNOG00000067409 AllianceGenome:RGD:1597725
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in cytoplasm. Orthologous to human CFAP299 (cilia and flagella associated protein 299). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 91.3) and Lung (RPKM 17.5) See more
Orthologs
human mouse all
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Genomic context

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See Cfap299 in Genome Data Viewer
Location:
14p22
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (11091314..11576981, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (10787191..11272894, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (12437350..12921997, complement)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481716 Neighboring gene protein kinase cGMP-dependent 2 Neighboring gene bone morphogenetic protein 3 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene ribosomal protein S3a, pseudogene 3 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene fibroblast growth factor 5 Neighboring gene PR/SET domain 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Cloning of a new testis-enriched gene C4orf22 and its role in cell cycle and apoptosis in mouse spermatogenic cells. Li H, et al. Mol Biol Rep, 2019 Apr. PMID 30820741

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cilia and flagella associated protein 299; cilia- and flagella-associated protein 299
Names
uncharacterized protein C4orf22 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432873.1 → NP_001419802.1  cilia and flagella associated protein 299

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000014
    UniProtKB/TrEMBL
    A0A8I5ZT97

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    11091314..11576981 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039092653.2 → XP_038948581.1  cilia- and flagella-associated protein 299 isoform X1

    Related
    ENSRNOP00000100394.1, ENSRNOT00000171179.1
    Conserved Domains (1) summary
    pfam14713
    Location:13 → 232
    DUF4464; Domain of unknown function (DUF4464)

  2. XM_039092654.2 → XP_038948582.1  cilia- and flagella-associated protein 299 isoform X2

    Conserved Domains (1) summary
    pfam14713
    Location:13 → 158
    DUF4464; Domain of unknown function (DUF4464)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials