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Speer4cl4 spermatogenesis associated glutamate (E)-rich protein 4C like 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 685183, updated on 17-Aug-2024

Summary

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Official Symbol
Speer4cl4provided by RGD
Official Full Name
spermatogenesis associated glutamate (E)-rich protein 4C like 4provided by RGD
Primary source
RGD:1597700
See related
AllianceGenome:RGD:1597700
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Speer4cl1
Annotation information
Annotation category: partial on reference assembly
Expression
Biased expression in Testes (RPKM 104.1), Brain (RPKM 37.2) and 3 other tissues See more
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Genomic context

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See Speer4cl4 in Genome Data Viewer
Location:
19q11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (23062103..23064461, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 Unlocalized Scaffold NW_023637717.1 (35..9954, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (27985075..28102211)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase II subunit GRINL1A-like Neighboring gene disks large homolog 5-like Neighboring gene discs large MAGUK scaffold protein 5 like 1 Neighboring gene IQ motif containing M Neighboring gene septin 7, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
disks large homolog 5-like; similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)
Names
spermatogenesis associated glutamate (E)-rich protein 4C like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    23062103..23064461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039100718.2 → XP_038956646.2  disks large homolog 5-like

Nucleotide Protein Strain
Heading Accession and Version

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