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Speer4c1l spermatogenesis associated glutamate (E)-rich protein 4C1 like [ Rattus norvegicus (Norway rat) ]

Gene ID: 685199, updated on 17-Aug-2024

Summary

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Official Symbol
Speer4c1lprovided by RGD
Official Full Name
spermatogenesis associated glutamate (E)-rich protein 4C1 likeprovided by RGD
Primary source
RGD:1597684
See related
AllianceGenome:RGD:1597684
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Speer4c
Expression
Biased expression in Testes (RPKM 141.6), Brain (RPKM 46.4) and 2 other tissues See more
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Genomic context

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Location:
19p14
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (254700..259567, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (247850..253393, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (28292418..28296686, complement)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene carboxylesterase 2E Neighboring gene uncharacterized LOC120098497 Neighboring gene U6 spliceosomal RNA Neighboring gene discs large MAGUK scaffold protein 5 like 13 Neighboring gene disks large homolog 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
disks large homolog 5-like; similar to RIKEN cDNA 5031410I06
Names
spermatogenesis associated glutamate (E)-rich protein 4C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    254700..259567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039098087.2 → XP_038954015.2  disks large homolog 5-like

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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