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Emid1 EMI domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 685462, updated on 2-Nov-2024

Summary

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Symbol
Emid1provided by RGD
Full Name
EMI domain containing 1provided by RGD
Primary source
RGD:1593795
See related
EnsemblRapid:ENSRNOG00000033575 AllianceGenome:RGD:1593795
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565846
Summary
Predicted to be located in Golgi apparatus; endoplasmic reticulum; and extracellular matrix. Orthologous to human EMID1 (EMI domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 56.3), Thymus (RPKM 49.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Emid1 in Genome Data Viewer
Location:
14q21
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (84214530..84257628, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (80000486..80043561, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (85357221..85400396, complement)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene EWS RNA-binding protein 1 Neighboring gene rhomboid domain containing 3 Neighboring gene kringle containing transmembrane protein 1 Neighboring gene chromosome 14 C22orf31 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Developmental expression and biochemical characterization of Emu family members. Leimeister C, et al. Dev Biol, 2002 Sep 15. PMID 12221002
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
  
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
  
located_in extracellular matrix ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
EMI domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401620.1 → NP_001388549.1  EMI domain-containing protein 1 isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000014
    UniProtKB/TrEMBL
    A0A8I5ZXK2
    Related
    ENSRNOP00000082254.1, ENSRNOT00000098869.2

  2. NM_001401621.1 → NP_001388550.1  EMI domain-containing protein 1 isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000014
    UniProtKB/TrEMBL
    A0A8I6GER7
    Related
    ENSRNOP00000101401.1, ENSRNOT00000150844.1

  3. NM_001401622.1 → NP_001388551.1  EMI domain-containing protein 1 isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000014
    UniProtKB/TrEMBL
    A0A8I6A757
    Related
    ENSRNOP00000087090.1, ENSRNOT00000105678.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    84214530..84257628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008770369.4 → XP_008768591.1  EMI domain-containing protein 1 isoform X2

    Related
    ENSRNOP00000086266.2, ENSRNOT00000105384.2
    Conserved Domains (2) summary
    pfam01391
    Location:320 → 370
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:35 → 100
    EMI; EMI domain

  2. XM_039092451.2 → XP_038948379.1  EMI domain-containing protein 1 isoform X1

    Related
    ENSRNOP00000054173.3, ENSRNOT00000057361.4
    Conserved Domains (2) summary
    pfam01391
    Location:321 → 370
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:35 → 100
    EMI; EMI domain

  3. XM_039092452.2 → XP_038948380.1  EMI domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    pfam07546
    Location:35 → 100
    EMI; EMI domain

RNA

  1. XR_005493011.2 RNA Sequence

  2. XR_005493012.2 RNA Sequence

  3. XR_005493010.2 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001109467.1: Suppressed sequence

    Description
    NM_001109467.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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