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C4h3orf22 similar to human chromosome 3 open reading frame 22 [ Rattus norvegicus (Norway rat) ]

Gene ID: 685964, updated on 2-Nov-2024

Summary

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Official Symbol
C4h3orf22provided by RGD
Official Full Name
similar to human chromosome 3 open reading frame 22provided by RGD
Primary source
RGD:1587811
See related
EnsemblRapid:ENSRNOG00000025934 AllianceGenome:RGD:1587811
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human C3orf22 (chromosome 3 open reading frame 22). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 67.4) See more
Orthologs
human mouse all
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Genomic context

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See C4h3orf22 in Genome Data Viewer
Location:
4q34
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (124374885..124379380)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (122817681..122822175)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (122217505..122221999)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 103 Neighboring gene vomeronasal 1 receptor 104 Neighboring gene uncharacterized LOC134486811 Neighboring gene carbohydrate sulfotransferase 13 Neighboring gene urocanate hydratase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein C3orf22 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109489.1 → NP_001102959.1  uncharacterized protein C3orf22 homolog

    See identical proteins and their annotated locations for NP_001102959.1

    Status: VALIDATED

    Source sequence(s)
    CH473957
    UniProtKB/TrEMBL
    A6IB75, D3ZFJ8

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    124374885..124379380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039108358.2 → XP_038964286.1  uncharacterized protein C3orf22 homolog isoform X1

    UniProtKB/TrEMBL
    A6IB75, D3ZFJ8

  2. XM_039108356.2 → XP_038964284.1  uncharacterized protein C3orf22 homolog isoform X1

    UniProtKB/TrEMBL
    A6IB75, D3ZFJ8
    Related
    ENSRNOP00000036428.3, ENSRNOT00000030426.5

  3. XM_039108357.2 → XP_038964285.1  uncharacterized protein C3orf22 homolog isoform X1

    UniProtKB/TrEMBL
    A6IB75, D3ZFJ8
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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