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Abhd11-as1 ABHD11 antisense RNA 1 (tail to tail) [ Rattus norvegicus (Norway rat) ]

Gene ID: 686120, updated on 5-Mar-2024

Summary

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Official Symbol
Abhd11-as1provided by RGD
Official Full Name
ABHD11 antisense RNA 1 (tail to tail)provided by RGD
Primary source
RGD:1585479
See related
AllianceGenome:RGD:1585479
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Wbscr26; Abhd11os
Summary
Orthologous to human ABHD11-AS1 (ABHD11 antisense RNA 1 (tail to tail)). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 183.7), Brain (RPKM 11.3) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Abhd11-as1 in Genome Data Viewer
Location:
12q12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (27317656..27318643)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (21681118..21682106)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (24721190..24722177)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene BUD23, rRNA methyltransferase and ribosome maturation factor Neighboring gene small Cajal body-specific RNA 20 Neighboring gene syntaxin 1A Neighboring gene abhydrolase domain containing 11 Neighboring gene claudin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Knockdown of Long Noncoding RNA Abhd11os Attenuates Myocardial Ischemia/Reperfusion Injury by Inhibiting Apoptosis in Cardiomyocytes. Liu X, et al. J Cardiovasc Pharmacol, 2022 Feb 1. PMID 34117183
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Knockdown of Long Noncoding RNA Abhd11os Attenuates Myocardial Ischemia/Reperfusion Injury by Inhibiting Apoptosis in Cardiomyocytes.
    Title: Knockdown of Long Noncoding RNA Abhd11os Attenuates Myocardial Ischemia/Reperfusion Injury by Inhibiting Apoptosis in Cardiomyocytes.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Other Names

  • Williams Beuren syndrome chromosome region 26
  • abhydrolase domain containing 11, opposite strand

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026689.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AI059630, CB705680

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    27317656..27318643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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