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Kri1 KRI1 homolog [ Rattus norvegicus (Norway rat) ]

Gene ID: 687183, updated on 2-Nov-2024

Summary

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Official Symbol
Kri1provided by RGD
Official Full Name
KRI1 homologprovided by RGD
Primary source
RGD:1588903
See related
EnsemblRapid:ENSRNOG00000057447 AllianceGenome:RGD:1588903
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in nucleolus. Orthologous to human KRI1 (KRI1 homolog). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 139.1), Spleen (RPKM 122.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Kri1 in Genome Data Viewer
Location:
8q13
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (28093175..28107576, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (19817005..19831516, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (22301025..22317049, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene Kelch-like ECH-associated protein 1 Neighboring gene sphingosine-1-phosphate receptor 5 Neighboring gene autophagy related 4D, cysteine peptidase Neighboring gene cyclin dependent kinase inhibitor 2D Neighboring gene adaptor related protein complex 1 subunit mu 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
protein KRI1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001398706.1 → NP_001385635.1  protein KRI1 homolog

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    A0A0G2JXS2
    Related
    ENSRNOP00000070383.2, ENSRNOT00000085605.3
    Conserved Domains (2) summary
    pfam05178
    Location:318 → 403
    Kri1; KRI1-like family
    pfam12936
    Location:494 → 582
    Kri1_C; KRI1-like family C-terminal

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    28093175..28107576 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039082792.2 → XP_038938720.1  protein KRI1 homolog isoform X1

    Conserved Domains (2) summary
    pfam05178
    Location:317 → 402
    Kri1; KRI1-like family
    pfam12936
    Location:493 → 581
    Kri1_C; KRI1-like family C-terminal

  2. XM_063266154.1 → XP_063122224.1  protein KRI1 homolog isoform X2

  3. XM_039082794.2 → XP_038938722.1  protein KRI1 homolog isoform X2

    Conserved Domains (2) summary
    pfam05178
    Location:204 → 289
    Kri1; KRI1-like family
    pfam12936
    Location:380 → 468
    Kri1_C; KRI1-like family C-terminal

  4. XM_039082795.2 → XP_038938723.1  protein KRI1 homolog isoform X3

    Conserved Domains (1) summary
    pfam05178
    Location:318 → 396
    Kri1; KRI1-like family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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