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Arl15 ADP-ribosylation factor like GTPase 15 [ Rattus norvegicus (Norway rat) ]

Gene ID: 689079, updated on 10-Oct-2024

Summary

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Symbol
Arl15provided by RGD
Full Name
ADP-ribosylation factor like GTPase 15provided by RGD
Primary source
RGD:1597407
See related
EnsemblRapid:ENSRNOG00000068448 AllianceGenome:RGD:1597407
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Arfrp2
Summary
Predicted to enable GTP binding activity and GTPase activity. Orthologous to human ARL15 (ADP ribosylation factor like GTPase 15). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 86.0), Lung (RPKM 80.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Arl15 in Genome Data Viewer
Location:
2q14
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (47171377..47555666)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (45438221..45822562)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (45668852..46053167)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120100714 Neighboring gene eukaryotic translation initiation factor 1-like Neighboring gene NOP16 nucleolar protein, pseudogene 4 Neighboring gene biliverdin reductase A, pseudogene 1 Neighboring gene uncharacterized LOC120100716 Neighboring gene NADH:ubiquinone oxidoreductase subunit S4 Neighboring gene transfer RNA threonine (anticodon AGU) 8 Neighboring gene uncharacterized LOC120100717 Neighboring gene follistatin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
  2. Large-scale proteomics and phosphoproteomics of urinary exosomes. Gonzales PA, et al. J Am Soc Nephrol, 2009 Feb. PMID 19056867, Free PMC Article
  3. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. Principe S, et al. Proteomics, 2013 May. PMID 23533145, Free PMC Article
  4. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Prunotto M, et al. J Proteomics, 2013 Apr 26. PMID 23376485

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ADP-ribosylation factor-like protein 15
Names
ADP-ribosylation factor related protein 2
ADP-ribosylation factor-like 15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001399590.1 → NP_001386519.1  ADP-ribosylation factor-like protein 15

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002
    UniProtKB/TrEMBL
    A6I5R8, F1M6C4
    Related
    ENSRNOP00000077797.1, ENSRNOT00000112044.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    47171377..47555666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039103515.2 → XP_038959443.1  ADP-ribosylation factor-like protein 15 isoform X4

    UniProtKB/TrEMBL
    A0A8I5ZSX7
    Conserved Domains (1) summary
    cl38936
    Location:34 → 214
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_063282576.1 → XP_063138646.1  ADP-ribosylation factor-like protein 15 isoform X5

    Related
    ENSRNOP00000105985.1, ENSRNOT00000155468.1

  3. XM_063282575.1 → XP_063138645.1  ADP-ribosylation factor-like protein 15 isoform X1

  4. XM_039103513.2 → XP_038959441.1  ADP-ribosylation factor-like protein 15 isoform X3

    Conserved Domains (1) summary
    cl38936
    Location:87 → 207
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  5. XM_039103512.2 → XP_038959440.1  ADP-ribosylation factor-like protein 15 isoform X2

    Related
    ENSRNOP00000101061.1, ENSRNOT00000123569.1
    Conserved Domains (1) summary
    cl38936
    Location:87 → 246
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  6. XM_063282577.1 → XP_063138647.1  ADP-ribosylation factor-like protein 15 isoform X6

    Related
    ENSRNOP00000106119.1, ENSRNOT00000141574.1
Nucleotide Protein Strain
Heading Accession and Version

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