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Znrd2 zinc ribbon domain containing 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 689397, updated on 2-Nov-2024

Summary

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Official Symbol
Znrd2provided by RGD
Official Full Name
zinc ribbon domain containing 2provided by RGD
Primary source
RGD:1593467
See related
EnsemblRapid:ENSRNOG00000012736 AllianceGenome:RGD:1593467
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Sssca1
Summary
Predicted to enable identical protein binding activity. Orthologous to human ZNRD2 (zinc ribbon domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 85.6), Brain (RPKM 82.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Znrd2 in Genome Data Viewer
Location:
1q43
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (212447010..212448793, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (203017682..203019465, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (221087803..221089586, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene EH domain binding protein 1-like 1 Neighboring gene potassium two pore domain channel subfamily K member 7 Neighboring gene family with sequence similarity 89, member B Neighboring gene latent transforming growth factor beta binding protein 3 Neighboring gene SCY1 like pseudokinase 1 Neighboring gene uncharacterized LOC120097381 Neighboring gene nuclear paraspeckle assembly transcript 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Protein-protein interaction panel using mouse full-length cDNAs. Suzuki H, et al. Genome Res, 2001 Oct. PMID 11591653, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein ZNRD2
Names
Sjoegren syndrome/scleroderma autoantigen 1
Sjogren syndrome/scleroderma autoantigen 1 homolog
Sjogren's syndrome/scleroderma autoantigen 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109537.2 → NP_001103007.1  protein ZNRD2

    See identical proteins and their annotated locations for NP_001103007.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I6A6N4, A6HZ96, D3ZG88
    Related
    ENSRNOP00000017034.4, ENSRNOT00000017034.7
    Conserved Domains (2) summary
    pfam06677
    Location:37 → 74
    Auto_anti-p27; Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
    cl00210
    Location:2 → 95
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    212447010..212448793 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063274608.1 → XP_063130678.1  protein ZNRD2 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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