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LOC689481 similar to ribosomal protein S12 [ Rattus norvegicus (Norway rat) ]

Gene ID: 689481, updated on 2-Nov-2024

Summary

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Official Symbol
LOC689481provided by RGD
Official Full Name
similar to ribosomal protein S12provided by RGD
Primary source
RGD:1592281
See related
EnsemblRapid:ENSRNOG00000076152 AllianceGenome:RGD:1592281
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in nucleolus. Predicted to be part of small-subunit processome. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See LOC689481 in Genome Data Viewer
Location:
5q22
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (61763055..61763584, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (56967192..56987008, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (58184883..58185386, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102547621 Neighboring gene C-C motif chemokine ligand 27 Neighboring gene C-C motif chemokine ligand 19 Neighboring gene C-C motif chemokine ligand 21 Neighboring gene protein SPATA31F1-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in ribosomal small subunit biogenesis ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
part_of small-subunit processome ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein eS12-like
Names
40S ribosomal protein S12-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    61763055..61763584 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039110970.2 → XP_038966898.1  small ribosomal subunit protein eS12-like

    UniProtKB/Swiss-Prot
    P63324
    UniProtKB/TrEMBL
    D3ZEB8
    Related
    ENSRNOP00000062764.2, ENSRNOT00000040968.4
    Conserved Domains (1) summary
    pfam01248
    Location:16 → 111
    Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Nucleotide Protein Strain
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